Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FP_RS06820 Genome accession   NZ_CP172368
Coordinates   1317245..1317760 (-) Length   171 a.a.
NCBI ID   WP_002907516.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH019     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1312245..1322760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FP_RS06805 (ACH6FP_06805) - 1312348..1314075 (-) 1728 WP_052804962.1 flagellin A -
  ACH6FP_RS06810 (ACH6FP_06810) - 1314158..1315984 (-) 1827 WP_002856576.1 motility associated factor glycosyltransferase family protein -
  ACH6FP_RS06815 (ACH6FP_06815) - 1315996..1317245 (-) 1250 Protein_1322 DUF2920 family protein -
  ACH6FP_RS06820 (ACH6FP_06820) ctsG 1317245..1317760 (-) 516 WP_002907516.1 type II secretion system protein Machinery gene
  ACH6FP_RS06825 (ACH6FP_06825) tsaD 1317761..1318768 (-) 1008 WP_002867317.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FP_RS06830 (ACH6FP_06830) - 1318765..1320159 (-) 1395 WP_002856050.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FP_RS06835 (ACH6FP_06835) dxr 1320161..1321231 (-) 1071 WP_002855670.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FP_RS06840 (ACH6FP_06840) cdsA 1321228..1321953 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  ACH6FP_RS06845 (ACH6FP_06845) - 1321962..1322300 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.52 Da        Isoelectric Point: 6.4693

>NTDB_id=1066896 ACH6FP_RS06820 WP_002907516.1 1317245..1317760(-) (ctsG) [Campylobacter jejuni strain YH019]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNIKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066896 ACH6FP_RS06820 WP_002907516.1 1317245..1317760(-) (ctsG) [Campylobacter jejuni strain YH019]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACATTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment