Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FI_RS08010 Genome accession   NZ_CP172364
Coordinates   1490985..1491500 (-) Length   171 a.a.
NCBI ID   WP_002875272.1    Uniprot ID   A0A5T0KSE7
Organism   Campylobacter jejuni strain YH021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485985..1496500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS07995 (ACH6FI_07990) - 1486095..1487912 (-) 1818 WP_395766409.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FI_RS08000 (ACH6FI_07995) - 1487909..1489732 (-) 1824 WP_395766410.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FI_RS08005 (ACH6FI_08000) - 1489742..1490985 (-) 1244 Protein_1560 DUF2920 family protein -
  ACH6FI_RS08010 (ACH6FI_08005) ctsG 1490985..1491500 (-) 516 WP_002875272.1 type II secretion system protein Machinery gene
  ACH6FI_RS08015 (ACH6FI_08010) tsaD 1491501..1492508 (-) 1008 WP_071311303.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FI_RS08020 (ACH6FI_08015) - 1492505..1493899 (-) 1395 WP_071311304.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FI_RS08025 (ACH6FI_08020) dxr 1493901..1494971 (-) 1071 WP_071311305.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FI_RS08030 (ACH6FI_08025) cdsA 1494968..1495693 (-) 726 WP_071311306.1 phosphatidate cytidylyltransferase -
  ACH6FI_RS08035 (ACH6FI_08030) - 1495702..1496040 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18650.51 Da        Isoelectric Point: 6.4682

>NTDB_id=1066841 ACH6FI_RS08010 WP_002875272.1 1490985..1491500(-) (ctsG) [Campylobacter jejuni strain YH021]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLLFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066841 ACH6FI_RS08010 WP_002875272.1 1490985..1491500(-) (ctsG) [Campylobacter jejuni strain YH021]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGCAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTCTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0KSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment