Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FD_RS07225 Genome accession   NZ_CP172362
Coordinates   1387523..1388038 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain YH022     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382523..1393038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FD_RS07210 (ACH6FD_07210) - 1382636..1384453 (-) 1818 WP_395766639.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FD_RS07215 (ACH6FD_07215) - 1384450..1386273 (-) 1824 WP_395766640.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FD_RS07220 (ACH6FD_07220) - 1386283..1387523 (-) 1241 Protein_1403 DUF2920 family protein -
  ACH6FD_RS07225 (ACH6FD_07225) ctsG 1387523..1388038 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  ACH6FD_RS07230 (ACH6FD_07230) tsaD 1388039..1389046 (-) 1008 WP_002886115.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FD_RS07235 (ACH6FD_07235) - 1389043..1390437 (-) 1395 WP_002909663.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FD_RS07240 (ACH6FD_07240) dxr 1390439..1391509 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FD_RS07245 (ACH6FD_07245) cdsA 1391506..1392231 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  ACH6FD_RS07250 (ACH6FD_07250) - 1392240..1392578 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=1066814 ACH6FD_RS07225 WP_002799196.1 1387523..1388038(-) (ctsG) [Campylobacter jejuni strain YH022]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066814 ACH6FD_RS07225 WP_002799196.1 1387523..1388038(-) (ctsG) [Campylobacter jejuni strain YH022]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment