Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FZ_RS06850 Genome accession   NZ_CP172361
Coordinates   1313047..1313562 (-) Length   171 a.a.
NCBI ID   WP_395766100.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH023     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308047..1318562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FZ_RS06835 (ACH6FZ_06835) - 1308160..1309977 (-) 1818 WP_395766099.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FZ_RS06840 (ACH6FZ_06840) - 1309974..1311797 (-) 1824 WP_002858102.1 motility associated factor glycosyltransferase family protein -
  ACH6FZ_RS06845 (ACH6FZ_06845) - 1311807..1313047 (-) 1241 Protein_1328 DUF2920 family protein -
  ACH6FZ_RS06850 (ACH6FZ_06850) ctsG 1313047..1313562 (-) 516 WP_395766100.1 type II secretion system protein Machinery gene
  ACH6FZ_RS06855 (ACH6FZ_06855) tsaD 1313563..1314570 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FZ_RS06860 (ACH6FZ_06860) - 1314567..1315961 (-) 1395 WP_002865638.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FZ_RS06865 (ACH6FZ_06865) dxr 1315963..1317033 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FZ_RS06870 (ACH6FZ_06870) cdsA 1317030..1317755 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  ACH6FZ_RS06875 (ACH6FZ_06875) - 1317764..1318102 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18779.62 Da        Isoelectric Point: 5.2731

>NTDB_id=1066787 ACH6FZ_RS06850 WP_395766100.1 1313047..1313562(-) (ctsG) [Campylobacter jejuni strain YH023]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066787 ACH6FZ_RS06850 WP_395766100.1 1313047..1313562(-) (ctsG) [Campylobacter jejuni strain YH023]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment