Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FF_RS06835 Genome accession   NZ_CP172356
Coordinates   1321876..1322391 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain YH025     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316876..1327391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FF_RS06820 (ACH6FF_06820) - 1316986..1318803 (-) 1818 WP_052800508.1 motility associated factor glycosyltransferase family protein -
  ACH6FF_RS06825 (ACH6FF_06825) - 1318800..1320623 (-) 1824 WP_395766498.1 motility associated factor glycosyltransferase family protein -
  ACH6FF_RS06830 (ACH6FF_06830) - 1320635..1321876 (-) 1242 WP_052796647.1 DUF2920 family protein -
  ACH6FF_RS06835 (ACH6FF_06835) ctsG 1321876..1322391 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  ACH6FF_RS06840 (ACH6FF_06840) tsaD 1322392..1323399 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FF_RS06845 (ACH6FF_06845) - 1323396..1324790 (-) 1395 WP_002923606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FF_RS06850 (ACH6FF_06850) dxr 1324792..1325862 (-) 1071 WP_002871960.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FF_RS06855 (ACH6FF_06855) cdsA 1325859..1326584 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  ACH6FF_RS06860 (ACH6FF_06860) - 1326593..1326931 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=1066732 ACH6FF_RS06835 WP_002799196.1 1321876..1322391(-) (ctsG) [Campylobacter jejuni strain YH025]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066732 ACH6FF_RS06835 WP_002799196.1 1321876..1322391(-) (ctsG) [Campylobacter jejuni strain YH025]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment