Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FO_RS06825 Genome accession   NZ_CP172351
Coordinates   1318012..1318527 (-) Length   171 a.a.
NCBI ID   WP_070216869.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH028     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313012..1323527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FO_RS06810 (ACH6FO_06810) - 1313117..1314931 (-) 1815 WP_052782914.1 motility associated factor glycosyltransferase family protein -
  ACH6FO_RS06815 (ACH6FO_06815) - 1314928..1316751 (-) 1824 WP_317649952.1 motility associated factor glycosyltransferase family protein -
  ACH6FO_RS06820 (ACH6FO_06820) - 1316762..1318012 (-) 1251 WP_002888105.1 DUF2920 family protein -
  ACH6FO_RS06825 (ACH6FO_06825) ctsG 1318012..1318527 (-) 516 WP_070216869.1 type II secretion system protein Machinery gene
  ACH6FO_RS06830 (ACH6FO_06830) tsaD 1318528..1319534 (-) 1007 Protein_1325 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FO_RS06835 (ACH6FO_06835) - 1319531..1320925 (-) 1395 WP_002888103.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FO_RS06840 (ACH6FO_06840) dxr 1320927..1321997 (-) 1071 WP_038817243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FO_RS06845 (ACH6FO_06845) cdsA 1321994..1322719 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  ACH6FO_RS06850 (ACH6FO_06850) - 1322728..1323066 (-) 339 WP_022552380.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18602.46 Da        Isoelectric Point: 6.4682

>NTDB_id=1066652 ACH6FO_RS06825 WP_070216869.1 1318012..1318527(-) (ctsG) [Campylobacter jejuni strain YH028]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDLTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1066652 ACH6FO_RS06825 WP_070216869.1 1318012..1318527(-) (ctsG) [Campylobacter jejuni strain YH028]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAACAACCTTAAAACTTTGATTAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACCTTACAAGCTCTTCTAGTAATAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment