Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACG4I5_RS08820 Genome accession   NZ_CP172325
Coordinates   1939347..1939865 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain M812     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1934347..1944865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I5_RS08805 aroB 1935782..1936867 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  ACG4I5_RS08810 aroK 1936895..1937419 (-) 525 WP_000818616.1 shikimate kinase AroK -
  ACG4I5_RS08815 pilQ 1937606..1939321 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  ACG4I5_RS08820 pilP 1939347..1939865 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  ACG4I5_RS08825 pilO 1939855..1940445 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACG4I5_RS08830 pilN 1940438..1941022 (-) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  ACG4I5_RS08835 pilM 1941012..1942028 (-) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  ACG4I5_RS08840 - 1942171..1944648 (+) 2478 WP_000668733.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=1066359 ACG4I5_RS08820 WP_000792032.1 1939347..1939865(-) (pilP) [Vibrio cholerae strain M812]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1066359 ACG4I5_RS08820 WP_000792032.1 1939347..1939865(-) (pilP) [Vibrio cholerae strain M812]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment