Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACFU43_RS05615 Genome accession   NZ_CP172296
Coordinates   957790..959526 (+) Length   578 a.a.
NCBI ID   WP_396129519.1    Uniprot ID   -
Organism   Exiguobacterium mexicanum strain MM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952790..964526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFU43_RS05595 - 953234..953983 (+) 750 WP_396129517.1 methyl-accepting chemotaxis protein -
  ACFU43_RS05600 - 953996..954304 (+) 309 WP_214762184.1 hypothetical protein -
  ACFU43_RS05605 zupT 954398..955252 (-) 855 WP_396129518.1 zinc transporter ZupT -
  ACFU43_RS05610 secD 955476..957774 (+) 2299 Protein_1046 protein translocase subunit SecD -
  ACFU43_RS05615 recJ 957790..959526 (+) 1737 WP_396129519.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACFU43_RS05620 - 959523..960080 (+) 558 WP_396129520.1 single-stranded-DNA-specific exonuclease C-terminal domain-containing protein -
  ACFU43_RS05625 - 960082..960600 (+) 519 WP_396129521.1 adenine phosphoribosyltransferase -
  ACFU43_RS05630 - 960789..962979 (+) 2191 Protein_1050 RelA/SpoT family protein -
  ACFU43_RS05635 dtd 962996..963438 (+) 443 Protein_1051 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 63500.52 Da        Isoelectric Point: 4.7354

>NTDB_id=1066059 ACFU43_RS05615 WP_396129519.1 957790..959526(+) (recJ) [Exiguobacterium mexicanum strain MM]
MYHAKKRWVYPETDAAAIEQLQTELNISEQLATLLTQRGHRDVEAAKAFLYVEDELTFHDPFLFEQMPKVVDCLKQAADE
GEMVLIYGDYDVDGVSASAVMWHALTEMGVMAECYIPNRFTEGYGPNKEAFSWAAGEGFTLIITVDCGISGIEEAALLKE
LGVDLIITDHHEPKETLPDAFAIIHPHIDPSYPYDKLAGAGVALKVAHAVLGRMPEELLDLAVLGTIADLVPLDGENRLL
AKLGLKALDDSKRPGILALREVCALTDGTLNEESVGFAFGPRINAAGRLDSAMPALQMLLAESEEEALVLAQQLDKQNKE
RQDIVKTIAKEATELVEASMTNDRVLVVASERWNPGVVGIVASRLVEAYYRPVILLCHDPKTGKAKGSGRSIDGFDLFKE
LSKNEDILPHFGGHPAAAGMTLQSENVAELRRRLNEQAESIPDETFVARVNVDLKLDVNDVSLDLISEIGKLAPFGMGNP
SPRVVVADARLRDIRQIGRDNTHLKVQLAGDKRELDGIGFGFGHVVSEISKMAHVSVMGSLQVNEWNGMRKPQLMIQDIR
VDGFQVFDYRGKKTRSTS

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=1066059 ACFU43_RS05615 WP_396129519.1 957790..959526(+) (recJ) [Exiguobacterium mexicanum strain MM]
ATGTATCATGCGAAGAAACGCTGGGTGTACCCGGAAACGGATGCAGCAGCGATTGAACAGTTACAGACAGAACTAAATAT
ATCGGAGCAACTCGCGACGCTCCTCACACAACGGGGGCACCGCGACGTCGAGGCGGCCAAGGCGTTTTTATACGTCGAGG
ACGAATTGACGTTCCACGACCCGTTTTTATTTGAACAGATGCCAAAAGTCGTCGATTGTTTAAAGCAAGCGGCTGACGAA
GGTGAGATGGTCTTGATTTATGGCGACTATGACGTCGACGGCGTCAGCGCCTCGGCCGTCATGTGGCACGCCTTGACCGA
GATGGGTGTCATGGCGGAATGTTATATCCCGAACCGGTTCACCGAAGGGTACGGACCGAACAAAGAGGCGTTCAGCTGGG
CCGCGGGTGAAGGGTTCACCCTCATCATCACGGTCGACTGTGGAATCTCAGGGATTGAAGAGGCGGCACTTTTGAAAGAG
CTTGGGGTCGACTTGATCATCACCGACCACCACGAACCGAAAGAGACGCTGCCGGACGCGTTCGCCATCATCCATCCGCA
TATCGATCCGTCTTATCCGTACGACAAACTCGCCGGGGCTGGTGTCGCCCTCAAAGTGGCGCATGCCGTGCTCGGTCGGA
TGCCAGAGGAGTTGCTCGATTTGGCGGTCCTTGGCACGATTGCTGACCTTGTCCCGCTCGACGGGGAAAACCGCCTGCTC
GCCAAGCTCGGGCTCAAGGCGCTCGACGATTCGAAGCGCCCAGGAATTTTGGCGCTCCGTGAAGTGTGCGCGTTGACGGA
CGGGACGTTGAACGAGGAGTCGGTCGGTTTCGCCTTCGGTCCGCGCATCAACGCGGCCGGACGGCTCGACTCGGCGATGC
CGGCGCTCCAGATGTTGCTCGCCGAAAGCGAGGAAGAAGCGCTCGTACTGGCACAACAGCTCGACAAACAGAATAAAGAA
CGCCAAGACATCGTCAAGACGATTGCCAAAGAAGCGACAGAACTCGTCGAAGCCTCGATGACGAACGACCGCGTCCTCGT
CGTCGCCAGTGAACGCTGGAACCCAGGCGTCGTCGGGATTGTCGCCTCACGGCTCGTCGAGGCGTATTATCGTCCGGTCA
TCCTCTTGTGCCATGATCCGAAAACAGGGAAAGCGAAAGGGTCGGGCCGTTCAATCGACGGTTTCGATTTGTTCAAAGAA
TTATCGAAGAACGAAGATATCTTGCCGCACTTCGGCGGACACCCGGCCGCGGCCGGGATGACGCTTCAATCGGAGAACGT
GGCCGAACTGCGCCGCCGTCTGAACGAACAGGCCGAGTCGATTCCGGACGAGACGTTCGTCGCCCGCGTCAACGTTGACT
TGAAGCTCGACGTGAACGATGTGTCGCTCGACTTGATTTCAGAGATTGGCAAGCTCGCCCCGTTTGGGATGGGCAATCCA
TCACCGCGTGTCGTCGTGGCGGATGCAAGACTCCGCGACATCCGTCAAATCGGGCGTGACAACACCCATTTGAAGGTTCA
GCTCGCAGGGGACAAACGGGAACTCGATGGCATCGGCTTCGGTTTCGGTCATGTCGTCTCCGAGATTTCGAAGATGGCCC
ACGTCTCGGTCATGGGGAGTCTGCAAGTGAATGAATGGAACGGCATGCGCAAGCCGCAGCTCATGATTCAAGACATCCGT
GTCGACGGGTTCCAAGTGTTCGATTACCGGGGCAAGAAAACTCGCTCGACGAGTTGA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(452-558)

DHHA1 domain (DHHA1)

(314-437)

DHH family (DHH)

(84-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

48.448

100

0.486

Multiple sequence alignment