Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACH34D_RS12815 Genome accession   NZ_CP172271
Coordinates   2755923..2756576 (-) Length   217 a.a.
NCBI ID   WP_161094431.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain Eli5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2750923..2761576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH34D_RS12785 (ACH34D_12785) - 2751004..2751663 (-) 660 WP_021348851.1 DUF4290 domain-containing protein -
  ACH34D_RS12790 (ACH34D_12790) - 2751739..2752158 (-) 420 WP_024564901.1 thiol-disulfide oxidoreductase DCC family protein -
  ACH34D_RS12795 (ACH34D_12795) - 2752166..2752645 (-) 480 WP_034845719.1 heme-binding domain-containing protein -
  ACH34D_RS12800 (ACH34D_12800) der 2752873..2754183 (+) 1311 WP_009087927.1 ribosome biogenesis GTPase Der -
  ACH34D_RS12805 (ACH34D_12805) - 2754303..2755157 (-) 855 WP_009087925.1 phospholipase -
  ACH34D_RS12810 (ACH34D_12810) upp 2755267..2755917 (+) 651 WP_161094430.1 uracil phosphoribosyltransferase -
  ACH34D_RS12815 (ACH34D_12815) comF 2755923..2756576 (-) 654 WP_161094431.1 ComF family protein Machinery gene
  ACH34D_RS12820 (ACH34D_12820) - 2756598..2758103 (-) 1506 WP_029728207.1 helix-turn-helix domain-containing protein -
  ACH34D_RS12825 (ACH34D_12825) aceB 2758182..2759747 (+) 1566 WP_161094432.1 malate synthase A -
  ACH34D_RS12830 (ACH34D_12830) aceA 2759786..2761060 (+) 1275 WP_024568576.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25230.34 Da        Isoelectric Point: 8.9780

>NTDB_id=1066020 ACH34D_RS12815 WP_161094431.1 2755923..2756576(-) (comF) [Elizabethkingia anophelis strain Eli5]
MNFFTDILFPNRCLQCNHIIDGKDIICEGCYDQVDFTHWESLPKTLLQQKLCSLFPVENSYALMNFEKDGLSRKLIHNLK
YANREIVGDTLARWTAEKINLKSKPDILINIPLHAKKLKKRGYNQLHRFTETLSKEWDIPYNHHYLKRTAYSTAQARKKL
KQRKENINIFIVPNPLENIHFLLIDDVCTTGNTLASCAWEILKTPGNKLSVLVMAID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1066020 ACH34D_RS12815 WP_161094431.1 2755923..2756576(-) (comF) [Elizabethkingia anophelis strain Eli5]
ATGAATTTCTTTACAGATATATTATTTCCAAACCGTTGCCTTCAATGCAATCACATTATTGACGGAAAAGATATTATTTG
TGAAGGATGTTATGATCAGGTAGATTTTACCCATTGGGAATCATTACCGAAGACACTATTGCAACAGAAATTATGTTCTC
TTTTCCCTGTTGAGAATTCTTATGCTTTGATGAATTTTGAGAAAGATGGCCTTAGCAGAAAATTAATCCACAATCTCAAA
TATGCTAATCGCGAGATTGTAGGAGATACATTGGCCCGATGGACAGCGGAAAAAATAAATCTAAAATCAAAACCCGATAT
ACTGATTAATATTCCGTTACATGCCAAGAAACTAAAAAAACGGGGATATAATCAGCTGCATCGCTTTACAGAAACATTAT
CAAAGGAATGGGATATTCCATATAATCATCATTATTTAAAAAGGACAGCTTACAGCACTGCTCAAGCCAGAAAAAAATTG
AAACAAAGAAAGGAGAACATCAATATATTCATAGTTCCTAATCCCCTTGAAAACATTCATTTTCTTCTTATTGATGATGT
ATGTACTACAGGAAATACTTTAGCTTCGTGTGCATGGGAGATACTAAAAACGCCCGGCAATAAGCTGAGCGTTTTAGTTA
TGGCAATTGATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.302

99.078

0.488

Multiple sequence alignment