Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACHZK0_RS21355 Genome accession   NZ_CP172246
Coordinates   4155036..4157372 (-) Length   778 a.a.
NCBI ID   WP_097844005.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4150036..4162372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS21330 (ACHZK0_21330) - 4152698..4153042 (+) 345 WP_242253391.1 PH domain-containing protein -
  ACHZK0_RS21335 (ACHZK0_21335) - 4153081..4154148 (-) 1068 WP_242253393.1 AI-2E family transporter -
  ACHZK0_RS21340 (ACHZK0_21340) - 4154325..4154537 (+) 213 WP_000242555.1 hypothetical protein -
  ACHZK0_RS21345 (ACHZK0_21345) - 4154573..4154701 (-) 129 WP_001053553.1 YrzQ family protein -
  ACHZK0_RS21350 (ACHZK0_21350) - 4154720..4154908 (-) 189 WP_000469281.1 hypothetical protein -
  ACHZK0_RS21355 (ACHZK0_21355) recD2 4155036..4157372 (-) 2337 WP_097844005.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACHZK0_RS21360 (ACHZK0_21360) - 4157470..4158129 (-) 660 WP_073516586.1 tetratricopeptide repeat protein -
  ACHZK0_RS21365 (ACHZK0_21365) mnmA 4158240..4159355 (-) 1116 WP_048531354.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACHZK0_RS21370 (ACHZK0_21370) - 4159372..4160517 (-) 1146 WP_262740327.1 cysteine desulfurase family protein -
  ACHZK0_RS21375 (ACHZK0_21375) cymR 4160553..4160969 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87277.69 Da        Isoelectric Point: 5.1939

>NTDB_id=1065912 ACHZK0_RS21355 WP_097844005.1 4155036..4157372(-) (recD2) [Bacillus sp. 3G2]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
DNAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=1065912 ACHZK0_RS21355 WP_097844005.1 4155036..4157372(-) (recD2) [Bacillus sp. 3G2]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTACCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTTGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCTGATGCGCTAAATGGTGTTGTCAACAAACAAAAAGCTCAGGAAATATATGAGACGATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATCCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGTATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAAAATGTATCA
TTACAACTTGGTCACGTTTATATGGGGAAAGATCAACTCGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAAGAAGATATTGTAGGTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCTTCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATCCGCAGGCTCATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAATGTACAGTATGCACCATTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCGGGAACAGGGAAGACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCGGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCCGTAGGCCCTGGACAAGTGTTGAAAGACTTATTGAATGCAGGTGCAGTTCCGACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCGG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGGTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GACAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCGCCGATGTACCGTGGGCCTGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTATTGCAGCTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGGGATATTGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAGTCGCAAGGTAGTGAGTTCCCAATCGTAA
TCATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCATTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment