Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACHZK0_RS18475 Genome accession   NZ_CP172246
Coordinates   3629237..3630016 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus sp. 3G2     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3594910..3661315 3629237..3630016 within 0


Gene organization within MGE regions


Location: 3594910..3661315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS18325 (ACHZK0_18325) - 3595263..3596933 (-) 1671 WP_270606022.1 ribonuclease J -
  ACHZK0_RS18330 (ACHZK0_18330) dapA 3597695..3598573 (-) 879 WP_395760794.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACHZK0_RS18335 (ACHZK0_18335) dapG 3598585..3599817 (-) 1233 WP_395760795.1 aspartate kinase -
  ACHZK0_RS18340 (ACHZK0_18340) asd 3599841..3600887 (-) 1047 WP_061678191.1 aspartate-semialdehyde dehydrogenase -
  ACHZK0_RS18345 (ACHZK0_18345) dpaB 3601038..3601637 (-) 600 WP_001049480.1 dipicolinate synthase subunit B -
  ACHZK0_RS18350 (ACHZK0_18350) dpaA 3601634..3602536 (-) 903 WP_000954736.1 dipicolinic acid synthetase subunit A -
  ACHZK0_RS18355 (ACHZK0_18355) - 3602805..3603056 (-) 252 WP_060631972.1 YlmC/YmxH family sporulation protein -
  ACHZK0_RS18360 (ACHZK0_18360) - 3603187..3604428 (-) 1242 WP_000593004.1 M16 family metallopeptidase -
  ACHZK0_RS18365 (ACHZK0_18365) - 3604515..3605414 (-) 900 WP_262740375.1 polysaccharide deacetylase family protein -
  ACHZK0_RS18370 (ACHZK0_18370) pnp 3605566..3607704 (-) 2139 WP_097816845.1 polyribonucleotide nucleotidyltransferase -
  ACHZK0_RS18375 (ACHZK0_18375) rpsO 3607865..3608134 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  ACHZK0_RS18380 (ACHZK0_18380) ribF 3608235..3609206 (-) 972 WP_262740376.1 bifunctional riboflavin kinase/FAD synthetase -
  ACHZK0_RS18385 (ACHZK0_18385) truB 3609250..3610173 (-) 924 WP_395760796.1 tRNA pseudouridine(55) synthase TruB -
  ACHZK0_RS18390 (ACHZK0_18390) rbfA 3610260..3610616 (-) 357 WP_000776444.1 30S ribosome-binding factor RbfA -
  ACHZK0_RS18395 (ACHZK0_18395) - 3610632..3610913 (-) 282 WP_000582364.1 DUF503 domain-containing protein -
  ACHZK0_RS18400 (ACHZK0_18400) infB 3610910..3612970 (-) 2061 WP_262740377.1 translation initiation factor IF-2 -
  ACHZK0_RS18405 (ACHZK0_18405) - 3612975..3613286 (-) 312 WP_001286520.1 YlxQ family RNA-binding protein -
  ACHZK0_RS18410 (ACHZK0_18410) rnpM 3613287..3613559 (-) 273 WP_262740378.1 RNase P modulator RnpM -
  ACHZK0_RS18415 (ACHZK0_18415) nusA 3613571..3614677 (-) 1107 WP_000102596.1 transcription termination factor NusA -
  ACHZK0_RS18420 (ACHZK0_18420) rimP 3614695..3615165 (-) 471 WP_000359099.1 ribosome maturation factor RimP -
  ACHZK0_RS18425 (ACHZK0_18425) - 3615498..3619799 (-) 4302 WP_395760797.1 PolC-type DNA polymerase III -
  ACHZK0_RS18430 (ACHZK0_18430) - 3619924..3621624 (-) 1701 WP_377919264.1 proline--tRNA ligase -
  ACHZK0_RS18435 (ACHZK0_18435) rseP 3621734..3622990 (-) 1257 WP_377919263.1 RIP metalloprotease RseP -
  ACHZK0_RS18440 (ACHZK0_18440) dxr 3623008..3624150 (-) 1143 WP_061678201.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACHZK0_RS18445 (ACHZK0_18445) cdsA 3624174..3624965 (-) 792 WP_000813582.1 phosphatidate cytidylyltransferase -
  ACHZK0_RS18450 (ACHZK0_18450) uppS 3624983..3625759 (-) 777 WP_000971311.1 isoprenyl transferase -
  ACHZK0_RS18455 (ACHZK0_18455) frr 3625845..3626402 (-) 558 WP_000531505.1 ribosome recycling factor -
  ACHZK0_RS18460 (ACHZK0_18460) pyrH 3626405..3627127 (-) 723 WP_000042667.1 UMP kinase -
  ACHZK0_RS18465 (ACHZK0_18465) tsf 3627194..3628081 (-) 888 WP_395760798.1 translation elongation factor Ts -
  ACHZK0_RS18470 (ACHZK0_18470) rpsB 3628185..3628886 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  ACHZK0_RS18475 (ACHZK0_18475) codY 3629237..3630016 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACHZK0_RS18480 (ACHZK0_18480) hslU 3630094..3631485 (-) 1392 WP_061678204.1 ATP-dependent protease ATPase subunit HslU -
  ACHZK0_RS18485 (ACHZK0_18485) hslV 3631508..3632050 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  ACHZK0_RS18490 (ACHZK0_18490) xerC 3632093..3632992 (-) 900 WP_262740383.1 tyrosine recombinase XerC -
  ACHZK0_RS18495 (ACHZK0_18495) trmFO 3633058..3634362 (-) 1305 WP_000211998.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACHZK0_RS18500 (ACHZK0_18500) topA 3634411..3636489 (-) 2079 WP_088097492.1 type I DNA topoisomerase -
  ACHZK0_RS18505 (ACHZK0_18505) dprA 3636634..3637503 (-) 870 WP_262740384.1 DNA-processing protein DprA -
  ACHZK0_RS18510 (ACHZK0_18510) sucD 3637591..3638493 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  ACHZK0_RS18515 (ACHZK0_18515) sucC 3638513..3639673 (-) 1161 WP_395760799.1 ADP-forming succinate--CoA ligase subunit beta -
  ACHZK0_RS18520 (ACHZK0_18520) - 3639868..3640641 (-) 774 WP_088097494.1 ribonuclease HII -
  ACHZK0_RS18525 (ACHZK0_18525) ylqF 3640693..3641583 (-) 891 WP_000236692.1 ribosome biogenesis GTPase YlqF -
  ACHZK0_RS18530 (ACHZK0_18530) lepB 3641604..3642155 (-) 552 WP_000711857.1 signal peptidase I -
  ACHZK0_RS18535 (ACHZK0_18535) rplS 3642257..3642601 (-) 345 WP_001186518.1 50S ribosomal protein L19 -
  ACHZK0_RS18540 (ACHZK0_18540) trmD 3642748..3643482 (-) 735 WP_061678208.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACHZK0_RS18545 (ACHZK0_18545) rimM 3643482..3643997 (-) 516 WP_000170282.1 ribosome maturation factor RimM -
  ACHZK0_RS18550 (ACHZK0_18550) - 3644119..3644346 (-) 228 WP_000737399.1 KH domain-containing protein -
  ACHZK0_RS18555 (ACHZK0_18555) rpsP 3644361..3644633 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  ACHZK0_RS18560 (ACHZK0_18560) ffh 3644734..3646083 (-) 1350 WP_000863466.1 signal recognition particle protein -
  ACHZK0_RS18565 (ACHZK0_18565) - 3646096..3646428 (-) 333 WP_000891061.1 putative DNA-binding protein -
  ACHZK0_RS18570 (ACHZK0_18570) ftsY 3646563..3647552 (-) 990 WP_000007660.1 signal recognition particle-docking protein FtsY -
  ACHZK0_RS18575 (ACHZK0_18575) smc 3647568..3651137 (-) 3570 WP_395760800.1 chromosome segregation protein SMC -
  ACHZK0_RS18580 (ACHZK0_18580) rncS 3651285..3652022 (-) 738 WP_001146868.1 ribonuclease III -
  ACHZK0_RS18585 (ACHZK0_18585) acpP 3652081..3652314 (-) 234 WP_000786062.1 acyl carrier protein -
  ACHZK0_RS18590 (ACHZK0_18590) fabG 3652384..3653124 (-) 741 WP_061678211.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACHZK0_RS18595 (ACHZK0_18595) fabD 3653124..3654068 (-) 945 WP_262740387.1 ACP S-malonyltransferase -
  ACHZK0_RS18600 (ACHZK0_18600) plsX 3654083..3655075 (-) 993 WP_262740388.1 phosphate acyltransferase PlsX -
  ACHZK0_RS18605 (ACHZK0_18605) fapR 3655072..3655665 (-) 594 WP_000747352.1 transcription factor FapR -
  ACHZK0_RS18610 (ACHZK0_18610) recG 3655754..3657802 (-) 2049 WP_262740389.1 ATP-dependent DNA helicase RecG -
  ACHZK0_RS18615 (ACHZK0_18615) - 3658093..3659769 (-) 1677 WP_061678214.1 DAK2 domain-containing protein -
  ACHZK0_RS18620 (ACHZK0_18620) - 3659792..3660154 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  ACHZK0_RS18625 (ACHZK0_18625) rpmB 3660530..3660718 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  ACHZK0_RS18630 (ACHZK0_18630) spoVM 3660792..3660872 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1065904 ACHZK0_RS18475 WP_000421290.1 3629237..3630016(-) (codY) [Bacillus sp. 3G2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1065904 ACHZK0_RS18475 WP_000421290.1 3629237..3630016(-) (codY) [Bacillus sp. 3G2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACACAAAGCTTATTC
AACATTACAGAAACATCTTCTAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGCCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCGGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAGTTAAATGGAACAGAAGGTTTACTAGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCATTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment