Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   ACHZK0_RS05830 Genome accession   NZ_CP172246
Coordinates   1149959..1153474 (+) Length   1171 a.a.
NCBI ID   WP_262742311.1    Uniprot ID   -
Organism   Bacillus sp. 3G2     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144959..1158474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZK0_RS05795 (ACHZK0_05795) - 1145137..1145928 (-) 792 WP_395761324.1 phosphotransferase -
  ACHZK0_RS05800 (ACHZK0_05800) cspA 1146294..1146497 (+) 204 WP_000301522.1 RNA chaperone/antiterminator CspA -
  ACHZK0_RS05805 (ACHZK0_05805) - 1146691..1146891 (-) 201 WP_270342066.1 hypothetical protein -
  ACHZK0_RS05810 (ACHZK0_05810) - 1147209..1147394 (-) 186 WP_262742309.1 hypothetical protein -
  ACHZK0_RS05815 (ACHZK0_05815) - 1147680..1148261 (+) 582 WP_063263210.1 competence protein ComK -
  ACHZK0_RS05820 (ACHZK0_05820) - 1148629..1149222 (+) 594 WP_043936619.1 TVP38/TMEM64 family protein -
  ACHZK0_RS05825 (ACHZK0_05825) lepB 1149279..1149842 (+) 564 WP_061676503.1 signal peptidase I -
  ACHZK0_RS05830 (ACHZK0_05830) addB 1149959..1153474 (+) 3516 WP_262742311.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  ACHZK0_RS05835 (ACHZK0_05835) addA 1153471..1157196 (+) 3726 WP_395761325.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  ACHZK0_RS05840 (ACHZK0_05840) - 1157209..1157496 (+) 288 WP_262742314.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  ACHZK0_RS05845 (ACHZK0_05845) gerPF 1157577..1157792 (-) 216 WP_001141570.1 spore germination protein GerPF -
  ACHZK0_RS05850 (ACHZK0_05850) - 1157835..1158221 (-) 387 WP_262742315.1 spore germination protein GerPE -
  ACHZK0_RS05855 (ACHZK0_05855) gerPD 1158237..1158431 (-) 195 WP_001052807.1 spore germination protein GerPD -

Sequence

Protein


Download         Length: 1171 a.a.        Molecular weight: 134222.21 Da        Isoelectric Point: 5.1422

>NTDB_id=1065888 ACHZK0_RS05830 WP_262742311.1 1149959..1153474(+) (addB) [Bacillus sp. 3G2]
MSLRFVIGRAGSGKSTLCLHEVQEELKQRPRGETILYLVPEQMTFQTQQALIGSEDVRGSIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLA
NKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTIDE
KTLAQPVNELDLFYETTLTYEKIKQVAREEKIEIEKTIPLMEQPRFHSQALAHLETHYEARPNEKFHGEASVTIHTAANL
RAEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRD
VVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEK
MSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVLSGAGIEL
APTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATP
EVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSSVVSRDLYGDTIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSALVIEEIAPLLQRQIL
LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDESG
TFLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHIHNPIVEMKGDASEAEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQEFNVLQKYVHHTFENIGKDITEGVIDIAP
YKKGNKAACTFCNFKSVCQFDESLEDNQFRTLKDMKDSEAMEKIREEVGGE

Nucleotide


Download         Length: 3516 bp        

>NTDB_id=1065888 ACHZK0_RS05830 WP_262742311.1 1149959..1153474(+) (addB) [Bacillus sp. 3G2]
ATGTCACTTCGATTTGTGATTGGTAGAGCGGGAAGTGGAAAAAGTACACTTTGTTTACACGAAGTGCAAGAAGAGTTAAA
GCAGCGCCCAAGAGGGGAAACAATATTATATCTTGTGCCAGAACAGATGACATTCCAAACGCAGCAGGCGTTAATTGGTA
GTGAGGATGTTAGAGGTTCTATTCGGGCACAAGTTTTTAGTTTTTCACGGTTAGCGTGGAAGGTGCTGCAAGAAGTTGGC
GGAGCGAGTCGTCTTCACATTGATGAAGCGGGCGTACATATGCTACTTCGTAAAATTGTAGAGTCTCGTAAAGATGGATT
ATCAGTGTTCCAAAAAGCAGCGGAGCAAAACGGTTTCTTTGAACATCTTGGTAGTATGATTGCGGAGTTTAAACGTTATA
ACGTGACGCCATCTAACGTATATGAAATGTGGCAACAATTGGATGCACATAGTAGCAGTGCCGAACAAAAGCTATTAGCG
AATAAAGTGTATGATCTACAACTATTATATGATGATTTTGAACGTGCTTTAATCGGAAAATATTTAGATTCAGAAGACTA
CCTGCAATTACTAGTGGAAAAGCTTCCGCAATCTGAATATGTAAATGGGGCTGAAATTTATATAGATGGATTTCATTCTT
TCTCACCGCAAGAGCTAGAAATTGTAAGACAGCTTATGATTTGCGGAGCGAGAGTTACGATTACGTTAACGATAGATGAA
AAAACCTTAGCGCAGCCAGTAAATGAACTAGATTTATTTTATGAAACGACATTAACGTATGAAAAAATAAAACAAGTAGC
ACGTGAAGAGAAGATAGAAATTGAAAAAACGATTCCACTTATGGAACAACCACGTTTTCATTCGCAAGCATTAGCGCATT
TAGAAACGCATTATGAAGCGCGTCCGAATGAAAAGTTTCACGGGGAAGCGAGTGTAACGATTCATACAGCAGCGAATTTA
CGAGCTGAAGTAGAGGGTGTTGCCCGTGAAATTCGTAGACTTGTGGCGGATGAAGACTACCGTTACCGAGATATTGCGGT
TCTTCTTCGTAATGGAGAAAGTTATTACGATGTGATGCGAACGTTATTTACAGATTATAATATTCCGCACTTCATCGATG
AAAAACGCCCGATGTCACATCATCCGCTAGTAGAATGTATTCGTTCTGCACTAGAGATTATTAGCGGGAATTGGCGTTAT
GATGCAGTGTTTCGCTGCGTGAAAACAGAACTTTTATATCCATTAGACGTAAGAAAAGAAACGATGCGTGAAGAGATGGA
TGAGTTTGAAAACTACTGTTTAGCGTACGGTGTACAAGGGAAGAGATGGACTTCAGAAGATCCGTGGATGTATCGCCGCT
ATCGTTCTCTTGACGATACAGACGGGATGATTACAGACAGTGAACGTGAAATGGAAGAGAAAATAAATCGACTACGCGAC
GTTGTAAGAACGCCTGTTATTCGTATGCAAAAAAGGCTGAAACGTGCGGGAACAGTTATGCAAATGTGCGAAGCTGTTTA
CTTATTTTTAGAAGAGCTAGACGTTCCGAAAAAACTAGAAGCATTACGTATTCGTGCAGAAGAGAGCGGAGATTTCTTAT
TCGCGACAGATCATGAGCAAGTATGGGAAGAAGTAATGAGTCTTCTTGATACGTTCGTTGAAATGCTTGGCGAAGAGAAA
ATGTCACTTTCTATGTTCACAGATGTTATGTCGACAGGTCTTGAGGCGCTTCAATTCGCAAACATTCCGCCGTCATTAGA
CCAAGTGTTAATTGCGAATATTGATCGTTCTAGATTATCAAATGTGAAAGCAACATTTGTCATTGGCGTAAATGAAGGTG
TGATTCCAGCAGCACCTATGGATGAAGGTATGCTTTCTGATGAAGAAAGAGATGTTCTTAGTGGTGCAGGTATCGAATTA
GCACCAACGACGAGACAAACTCTACTAGAAGAACAGTTCGTTATGTACCAAATGGTAACGAGAGCGACTGAGAAATTATA
TATTTCTTGTCCGCTAGCAGATGAAGAAGGAAAGACGTTACTTGCGTCTAGCTTTATTAAGAAAATAAAAAGAATGTTCC
CTGATGTGAAAGATACATTTATTACGAATGACGTAAATGATTTATCTCGTTCGGAACAAATTTCATACGTAGCAACGCCA
GAAGTAACGTTGTCATATGTAATGCAGCAACTTCAAACGTGGAAGCGATACGGATTTGAAGGGAATTTAGACTTTTGGTG
GGACGTATATAACTTCTACGTTACTTCAGATGAATGGAAGCAAAAAAGTAGCCGCGTATTATCAAGCTTATTCTACCGAA
ATCGTGCGCAAAAGCTAAGTTCAGTTGTAAGTAGAGATTTATACGGAGACACAATAAAAGGAAGCGTCTCTCGTATGGAA
CTATTTAACCGTTGCGCATATGCTCATTTCGCGCAGCACGGTTTATCATTAAGAGAGCGTGATATTTTCAAGCTGGATGC
ACCGGATATTGGCGAGCTATTCCATGCAGCGCTGAAGAGAATTGCAGACAGGCTATTACGTGAAAATCGTACTTGGGCAG
ATTTATCAATAAAAGAGTGTGAGCATCTTTCTGCTTTAGTAATAGAAGAGATTGCACCGTTATTACAAAGACAAATTTTA
TTAAGTTCAAACCGTCATTTCTATTTAAAACAAAAACTACAACAAATCATTTTCCGTACGTCAATCATTCTTCGTGAGCA
CGCGAAATCAAGTGGTTTCGTACCAGTTGATTTAGAAGTGCCATTCGGTATGGGCGGTACAGGATCACTTCCGCCAATGG
AATTCTCATTACCAAATGGCGTGAAGATGGAAGTGGTTGGCCGTATTGACCGTGTTGATAAGGCAGAAGATGAAAGTGGT
ACGTTCCTACGTATTATTGACTATAAATCAAGCTCAAAAGCGTTAGACTTAACGGAAGTGTATTACGGATTGGCACTTCA
AATGTTAACGTATTTAGATGTTGTTACTTCAAATGCACATACGTGGATGAAAAAAGGAGGCACGGCATCACCGGCTGGTG
TACTGTACTTCCATATTCATAACCCAATCGTTGAGATGAAAGGTGACGCATCTGAAGCAGAAATTGAGAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGACTCGTGCTAGGCGATGCTGACGTTGTTCGTTTAATGGATAACAAACTTTCAACAGGAAG
CTCGGATATTATTTCTGCTGGTCTGAAAAAAGACGGTAGCTTTAGTGCGCGTTCGAGCATTGCAAGTGAACAAGAGTTTA
ACGTATTGCAAAAATACGTACACCATACGTTTGAAAATATCGGAAAAGATATTACAGAAGGTGTTATCGATATTGCTCCT
TACAAAAAAGGGAATAAAGCGGCATGTACGTTCTGTAACTTCAAATCTGTTTGTCAGTTCGATGAATCACTTGAAGATAA
TCAATTCCGTACGCTAAAAGATATGAAAGATAGCGAAGCGATGGAGAAAATTAGAGAGGAGGTTGGCGGAGAATGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(302-669)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(795-1139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.148

100

0.493

Multiple sequence alignment