Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACHKST_RS08175 Genome accession   NZ_CP172011
Coordinates   1598736..1599515 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain Bv.g1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593736..1604515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS08155 trmFO 1594423..1595730 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACHKST_RS08160 xerC 1595800..1596717 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACHKST_RS08165 hslV 1596733..1597278 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACHKST_RS08170 hslU 1597295..1598698 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  ACHKST_RS08175 codY 1598736..1599515 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACHKST_RS08180 flgB 1599869..1600258 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACHKST_RS08185 flgC 1600258..1600710 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACHKST_RS08190 fliE 1600721..1601041 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACHKST_RS08195 fliF 1601084..1602694 (+) 1611 WP_101563016.1 flagellar basal-body MS-ring/collar protein FliF -
  ACHKST_RS08200 fliG 1602707..1603723 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACHKST_RS08205 fliH 1603716..1604471 (+) 756 WP_101563017.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1064828 ACHKST_RS08175 WP_003154263.1 1598736..1599515(+) (codY) [Bacillus velezensis strain Bv.g1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1064828 ACHKST_RS08175 WP_003154263.1 1598736..1599515(+) (codY) [Bacillus velezensis strain Bv.g1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACTGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGGGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment