Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACHFJ9_RS08785 Genome accession   NZ_CP171887
Coordinates   163096..163821 (-) Length   241 a.a.
NCBI ID   WP_006741795.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 158096..168821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS08760 (ACHFJ9_08760) - 159241..159732 (+) 492 WP_012841219.1 type II secretion system protein M -
  ACHFJ9_RS08765 (ACHFJ9_08765) - 159734..160495 (+) 762 WP_395356525.1 type II secretion system protein N -
  ACHFJ9_RS08770 (ACHFJ9_08770) cysQ 160796..161623 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACHFJ9_RS08775 (ACHFJ9_08775) nudE 161668..162237 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  ACHFJ9_RS08780 (ACHFJ9_08780) nfuA 162414..162998 (-) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  ACHFJ9_RS08785 (ACHFJ9_08785) comF 163096..163821 (-) 726 WP_006741795.1 amidophosphoribosyltransferase Machinery gene
  ACHFJ9_RS08790 (ACHFJ9_08790) bioH 163906..164673 (+) 768 WP_395356528.1 pimeloyl-ACP methyl ester esterase BioH -
  ACHFJ9_RS08795 (ACHFJ9_08795) - 164798..165262 (+) 465 WP_005379316.1 hypothetical protein -
  ACHFJ9_RS08800 (ACHFJ9_08800) - 165368..167689 (-) 2322 WP_005394964.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27774.99 Da        Isoelectric Point: 9.3979

>NTDB_id=1064632 ACHFJ9_RS08785 WP_006741795.1 163096..163821(-) (comF) [Vibrio sp. D3]
MLSHHWQNIMHRVLSSQCGLCRFPIHTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKASREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1064632 ACHFJ9_RS08785 WP_006741795.1 163096..163821(-) (comF) [Vibrio sp. D3]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCTATTCACAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACCAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCTCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACCTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCACGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment