Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACHD8M_RS08815 Genome accession   NZ_CP171807
Coordinates   1702810..1703589 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BRI3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697810..1708589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS08795 trmFO 1698492..1699799 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACHD8M_RS08800 xerC 1699874..1700791 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACHD8M_RS08805 hslV 1700807..1701352 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  ACHD8M_RS08810 hslU 1701369..1702772 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  ACHD8M_RS08815 codY 1702810..1703589 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACHD8M_RS08820 flgB 1703943..1704332 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACHD8M_RS08825 flgC 1704332..1704784 (+) 453 WP_159354159.1 flagellar basal body rod protein FlgC -
  ACHD8M_RS08830 fliE 1704795..1705115 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACHD8M_RS08835 fliF 1705158..1706768 (+) 1611 WP_159354160.1 flagellar basal-body MS-ring/collar protein FliF -
  ACHD8M_RS08840 fliG 1706781..1707797 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACHD8M_RS08845 fliH 1707790..1708545 (+) 756 WP_159354161.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1064334 ACHD8M_RS08815 WP_003154263.1 1702810..1703589(+) (codY) [Bacillus velezensis strain BRI3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1064334 ACHD8M_RS08815 WP_003154263.1 1702810..1703589(+) (codY) [Bacillus velezensis strain BRI3]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment