Detailed information NTG1064096

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JK_RS09135
• Genome accession: NZ_CP171738
• Coordinates: 1784600..1785535 (+)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M23
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1779600..1790535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JK_RS09115 (ACG3JK_09115)	-	1779853..1781511 (+)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-
ACG3JK_RS09120 (ACG3JK_09120)	-	1781587..1782501 (+)	915	WP_004347295.1	ABC transporter permease	-
ACG3JK_RS09125 (ACG3JK_09125)	-	1782511..1783542 (+)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JK_RS09130 (ACG3JK_09130)	oppD	1783557..1784600 (+)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JK_RS09135 (ACG3JK_09135)	amiF	1784600..1785535 (+)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JK_RS09140 (ACG3JK_09140)	rnjA	1785601..1787283 (-)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JK_RS09145 (ACG3JK_09145)	-	1787285..1787515 (-)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JK_RS09150 (ACG3JK_09150)	tsaB	1787788..1788480 (+)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JK_RS09155 (ACG3JK_09155)	rimI	1788485..1788901 (+)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JK_RS09160 (ACG3JK_09160)	tsaD	1788891..1789904 (+)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1064096 ACG3JK_RS09135 WP_013794449.1 1784600..1785535(+) (amiF) [Streptococcus parauberis strain DB-M23]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1064096 ACG3JK_RS09135 WP_013794449.1 1784600..1785535(+) (amiF) [Streptococcus parauberis strain DB-M23]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527