Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ACG3JK_RS06890 | Genome accession | NZ_CP171738 |
| Coordinates | 1376100..1377056 (-) | Length | 318 a.a. |
| NCBI ID | WP_003103712.1 | Uniprot ID | A0A0E2UAX9 |
| Organism | Streptococcus parauberis strain DB-M23 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1371100..1382056
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG3JK_RS06860 (ACG3JK_06860) | pepA | 1371555..1372622 (+) | 1068 | WP_003105090.1 | glutamyl aminopeptidase | - |
| ACG3JK_RS06865 (ACG3JK_06865) | proC | 1372634..1373404 (+) | 771 | WP_003104671.1 | pyrroline-5-carboxylate reductase | - |
| ACG3JK_RS06870 (ACG3JK_06870) | - | 1373421..1374074 (-) | 654 | WP_013794395.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ACG3JK_RS06875 (ACG3JK_06875) | - | 1374083..1374535 (-) | 453 | WP_003108634.1 | hypothetical protein | - |
| ACG3JK_RS06880 (ACG3JK_06880) | - | 1374528..1374740 (-) | 213 | WP_003108636.1 | helix-turn-helix transcriptional regulator | - |
| ACG3JK_RS06885 (ACG3JK_06885) | - | 1374851..1376044 (-) | 1194 | WP_003108638.1 | acetate kinase | - |
| ACG3JK_RS06890 (ACG3JK_06890) | comYH | 1376100..1377056 (-) | 957 | WP_003103712.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACG3JK_RS06895 (ACG3JK_06895) | comGG | 1377163..1377660 (-) | 498 | WP_003108640.1 | competence type IV pilus minor pilin ComGG | - |
| ACG3JK_RS06900 (ACG3JK_06900) | comGF | 1377638..1378075 (-) | 438 | WP_003102915.1 | competence type IV pilus minor pilin ComGF | - |
| ACG3JK_RS06905 (ACG3JK_06905) | comGE | 1378053..1378352 (-) | 300 | WP_259966510.1 | competence type IV pilus minor pilin ComGE | - |
| ACG3JK_RS06910 (ACG3JK_06910) | comGD | 1378324..1378731 (-) | 408 | WP_243619590.1 | competence type IV pilus minor pilin ComGD | - |
| ACG3JK_RS06915 (ACG3JK_06915) | comYC | 1378721..1379041 (-) | 321 | WP_013794397.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACG3JK_RS06920 (ACG3JK_06920) | - | 1379694..1380419 (-) | 726 | WP_013794398.1 | peptidoglycan amidohydrolase family protein | - |
| ACG3JK_RS06925 (ACG3JK_06925) | - | 1380412..1380876 (-) | 465 | WP_013794399.1 | phage holin family protein | - |
| ACG3JK_RS06930 (ACG3JK_06930) | - | 1380880..1381029 (-) | 150 | WP_259966511.1 | hypothetical protein | - |
| ACG3JK_RS06935 (ACG3JK_06935) | - | 1381092..1381430 (-) | 339 | WP_013794400.1 | DUF1366 domain-containing protein | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36032.20 Da Isoelectric Point: 4.9473
>NTDB_id=1064080 ACG3JK_RS06890 WP_003103712.1 1376100..1377056(-) (comYH) [Streptococcus parauberis strain DB-M23]
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS
Nucleotide
Download Length: 957 bp
>NTDB_id=1064080 ACG3JK_RS06890 WP_003103712.1 1376100..1377056(-) (comYH) [Streptococcus parauberis strain DB-M23]
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
63.608 |
99.371 |
0.632 |
| comYH | Streptococcus mutans UA159 |
63.291 |
99.371 |
0.629 |