Detailed information NTG1064041

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JL_RS08520
• Genome accession: NZ_CP171737
• Coordinates: 1685462..1686397 (-)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M18
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1680462..1691397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JL_RS08495 (ACG3JL_08495)	tsaD	1681093..1682106 (-)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
ACG3JL_RS08500 (ACG3JL_08500)	rimI	1682096..1682512 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JL_RS08505 (ACG3JL_08505)	tsaB	1682517..1683209 (-)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JL_RS08510 (ACG3JL_08510)	-	1683482..1683712 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JL_RS08515 (ACG3JL_08515)	rnjA	1683714..1685396 (+)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JL_RS08520 (ACG3JL_08520)	amiF	1685462..1686397 (-)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JL_RS08525 (ACG3JL_08525)	oppD	1686397..1687440 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JL_RS08530 (ACG3JL_08530)	-	1687455..1688486 (-)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JL_RS08535 (ACG3JL_08535)	-	1688496..1689410 (-)	915	WP_004347295.1	ABC transporter permease	-
ACG3JL_RS08540 (ACG3JL_08540)	-	1689486..1691144 (-)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1064041 ACG3JL_RS08520 WP_013794449.1 1685462..1686397(-) (amiF) [Streptococcus parauberis strain DB-M18]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1064041 ACG3JL_RS08520 WP_013794449.1 1685462..1686397(-) (amiF) [Streptococcus parauberis strain DB-M18]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527