Detailed information NTG1063992

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JE_RS08560
• Genome accession: NZ_CP171736
• Coordinates: 1685250..1686185 (-)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M17
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1680250..1691185

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JE_RS08535 (ACG3JE_08535)	tsaD	1680881..1681894 (-)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
ACG3JE_RS08540 (ACG3JE_08540)	rimI	1681884..1682300 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JE_RS08545 (ACG3JE_08545)	tsaB	1682305..1682997 (-)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JE_RS08550 (ACG3JE_08550)	-	1683270..1683500 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JE_RS08555 (ACG3JE_08555)	rnjA	1683502..1685184 (+)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JE_RS08560 (ACG3JE_08560)	amiF	1685250..1686185 (-)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JE_RS08565 (ACG3JE_08565)	oppD	1686185..1687228 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JE_RS08570 (ACG3JE_08570)	-	1687243..1688274 (-)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JE_RS08575 (ACG3JE_08575)	-	1688284..1689198 (-)	915	WP_004347295.1	ABC transporter permease	-
ACG3JE_RS08580 (ACG3JE_08580)	-	1689274..1690932 (-)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1063992 ACG3JE_RS08560 WP_013794449.1 1685250..1686185(-) (amiF) [Streptococcus parauberis strain DB-M17]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1063992 ACG3JE_RS08560 WP_013794449.1 1685250..1686185(-) (amiF) [Streptococcus parauberis strain DB-M17]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527