Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | ACG3JM_RS09325 | Genome accession | NZ_CP171735 |
| Coordinates | 1825277..1826233 (+) | Length | 318 a.a. |
| NCBI ID | WP_003103712.1 | Uniprot ID | A0A0E2UAX9 |
| Organism | Streptococcus parauberis strain DB-M11 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1820277..1831233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACG3JM_RS09280 (ACG3JM_09280) | - | 1820903..1821241 (+) | 339 | WP_013794400.1 | DUF1366 domain-containing protein | - |
| ACG3JM_RS09285 (ACG3JM_09285) | - | 1821304..1821453 (+) | 150 | WP_259966511.1 | hypothetical protein | - |
| ACG3JM_RS09290 (ACG3JM_09290) | - | 1821457..1821921 (+) | 465 | WP_013794399.1 | phage holin family protein | - |
| ACG3JM_RS09295 (ACG3JM_09295) | - | 1821914..1822639 (+) | 726 | WP_013794398.1 | peptidoglycan amidohydrolase family protein | - |
| ACG3JM_RS09300 (ACG3JM_09300) | comYC | 1823292..1823612 (+) | 321 | WP_013794397.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACG3JM_RS09305 (ACG3JM_09305) | comGD | 1823602..1824009 (+) | 408 | WP_243619590.1 | competence type IV pilus minor pilin ComGD | - |
| ACG3JM_RS09310 (ACG3JM_09310) | comGE | 1823981..1824280 (+) | 300 | WP_259966510.1 | competence type IV pilus minor pilin ComGE | - |
| ACG3JM_RS09315 (ACG3JM_09315) | comGF | 1824258..1824695 (+) | 438 | WP_003102915.1 | competence type IV pilus minor pilin ComGF | - |
| ACG3JM_RS09320 (ACG3JM_09320) | comGG | 1824673..1825170 (+) | 498 | WP_003108640.1 | competence type IV pilus minor pilin ComGG | - |
| ACG3JM_RS09325 (ACG3JM_09325) | comYH | 1825277..1826233 (+) | 957 | WP_003103712.1 | class I SAM-dependent methyltransferase | Machinery gene |
| ACG3JM_RS09330 (ACG3JM_09330) | - | 1826289..1827482 (+) | 1194 | WP_003108638.1 | acetate kinase | - |
| ACG3JM_RS09335 (ACG3JM_09335) | - | 1827593..1827805 (+) | 213 | WP_003108636.1 | helix-turn-helix transcriptional regulator | - |
| ACG3JM_RS09340 (ACG3JM_09340) | - | 1827798..1828250 (+) | 453 | WP_003108634.1 | hypothetical protein | - |
| ACG3JM_RS09345 (ACG3JM_09345) | - | 1828259..1828912 (+) | 654 | WP_013794395.1 | CPBP family intramembrane glutamic endopeptidase | - |
| ACG3JM_RS09350 (ACG3JM_09350) | proC | 1828929..1829699 (-) | 771 | WP_003104671.1 | pyrroline-5-carboxylate reductase | - |
| ACG3JM_RS09355 (ACG3JM_09355) | pepA | 1829711..1830778 (-) | 1068 | WP_003105090.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 36032.20 Da Isoelectric Point: 4.9473
>NTDB_id=1063953 ACG3JM_RS09325 WP_003103712.1 1825277..1826233(+) (comYH) [Streptococcus parauberis strain DB-M11]
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS
MNFEKIEKAFELILENSQLIETDLHTHIYDAIIEQNSYLLGAKGANKQVEGNIQALKELHLTKEEWRRAFQFVFIKASQT
ERLQANHQFTPDSLGFILLYMMETLVSNHSFDLLEIGSGTGNLAQTILNNTSKSIDYLGIELDDLLIDLSASISEIMDSS
AKFLQEDAVRPQILKVSDVIISDLPVGYYPNDDIASRYKVASKEEHTYAHHLLMEQSLKYLKEGGYAIFLAPTNILTSPQ
SDLLKQWLKNYAQVMAVVTLPETMFGNPNNAKSIFVLGKTKNQAVETFVFPITNIQSTELIQDFMNKFKNWKLANVIS
Nucleotide
Download Length: 957 bp
>NTDB_id=1063953 ACG3JM_RS09325 WP_003103712.1 1825277..1826233(+) (comYH) [Streptococcus parauberis strain DB-M11]
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG
ATGAATTTTGAAAAAATAGAAAAAGCCTTTGAGCTTATTTTAGAGAATAGTCAGCTTATTGAAACGGACTTACATACACA
TATTTATGATGCAATTATTGAACAAAATTCCTACTTATTGGGTGCAAAAGGGGCAAACAAACAAGTTGAAGGAAATATTC
AAGCATTAAAAGAATTACACTTAACAAAAGAAGAATGGCGACGTGCCTTTCAATTTGTATTTATTAAGGCCTCACAGACC
GAGAGATTGCAAGCCAATCATCAATTTACTCCAGACAGTCTTGGTTTTATCTTGCTCTATATGATGGAGACTTTAGTATC
TAATCATTCATTTGATTTATTAGAAATTGGTAGTGGAACTGGTAATTTGGCTCAAACTATCTTAAACAATACGAGTAAGT
CTATTGACTATCTTGGTATTGAGCTGGATGACTTGCTTATCGATTTATCAGCAAGTATTTCTGAAATAATGGATTCTTCT
GCAAAATTTTTACAGGAAGATGCTGTGAGACCACAAATTCTTAAAGTAAGTGATGTTATCATTAGTGACTTACCAGTTGG
TTATTACCCAAATGACGATATAGCAAGTCGTTATAAAGTAGCTAGTAAGGAAGAGCATACTTATGCTCACCATTTATTAA
TGGAACAGTCATTGAAGTATCTAAAAGAAGGTGGTTATGCTATATTTTTAGCTCCAACTAATATTTTAACTAGTCCACAA
AGCGATCTGTTGAAGCAATGGTTAAAAAACTATGCCCAGGTTATGGCAGTTGTTACTTTACCTGAAACGATGTTTGGCAA
TCCAAATAATGCCAAGTCGATTTTTGTCTTAGGAAAAACGAAAAATCAAGCGGTTGAAACATTTGTCTTTCCAATTACTA
ACATTCAATCCACAGAGCTTATTCAAGATTTCATGAACAAGTTTAAAAATTGGAAACTTGCTAATGTCATTTCATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
63.608 |
99.371 |
0.632 |
| comYH | Streptococcus mutans UA159 |
63.291 |
99.371 |
0.629 |