Detailed information NTG1063937

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JM_RS07080
• Genome accession: NZ_CP171735
• Coordinates: 1416801..1417736 (-)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M11
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1411801..1422736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JM_RS07055 (ACG3JM_07055)	tsaD	1412432..1413445 (-)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
ACG3JM_RS07060 (ACG3JM_07060)	rimI	1413435..1413851 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JM_RS07065 (ACG3JM_07065)	tsaB	1413856..1414548 (-)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JM_RS07070 (ACG3JM_07070)	-	1414821..1415051 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JM_RS07075 (ACG3JM_07075)	rnjA	1415053..1416735 (+)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JM_RS07080 (ACG3JM_07080)	amiF	1416801..1417736 (-)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JM_RS07085 (ACG3JM_07085)	oppD	1417736..1418779 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JM_RS07090 (ACG3JM_07090)	-	1418794..1419825 (-)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JM_RS07095 (ACG3JM_07095)	-	1419835..1420749 (-)	915	WP_004347295.1	ABC transporter permease	-
ACG3JM_RS07100 (ACG3JM_07100)	-	1420825..1422483 (-)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1063937 ACG3JM_RS07080 WP_013794449.1 1416801..1417736(-) (amiF) [Streptococcus parauberis strain DB-M11]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1063937 ACG3JM_RS07080 WP_013794449.1 1416801..1417736(-) (amiF) [Streptococcus parauberis strain DB-M11]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527