Detailed information NTG1063910

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JM_RS00245
• Genome accession: NZ_CP171735
• Coordinates: 49072..50016 (+)
• Length: 314 a.a.
• NCBI ID: WP_003104982.1
• Uniprot ID: A0AAE4HY29
• Organism: Streptococcus parauberis strain DB-M11
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 44072..55016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JM_RS00230 (ACG3JM_00230)	amiC	45564..47063 (+)	1500	WP_013794303.1	ABC transporter permease	Regulator
ACG3JM_RS00235 (ACG3JM_00235)	amiD	47063..47989 (+)	927	WP_041828589.1	oligopeptide ABC transporter permease OppC	Regulator
ACG3JM_RS00240 (ACG3JM_00240)	-	47998..49079 (+)	1082	Protein_40	ABC transporter ATP-binding protein	-
ACG3JM_RS00245 (ACG3JM_00245)	amiF	49072..50016 (+)	945	WP_003104982.1	ATP-binding cassette domain-containing protein	Regulator

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 35745.06 Da
• Isoelectric Point: 6.9314

>NTDB_id=1063910 ACG3JM_RS00245 WP_003104982.1 49072..50016(+) (amiF) [Streptococcus parauberis strain DB-M11]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNDTSSGEIIYDGKQINKKKSNS
EREELIKKIQMIFQDPAASLNERATVDYIISEGLYNHKLFKSEEERKDKIKNMMTEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFIIADEPISALDVSVRAQVLNLLKRMQREKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPVHPYTKSLLSAVPIPDPILERQKKLLVYNVDQHDYTVDKPEMVEIQPGHFVWANKLETEKYKKEIADRQQSN

Nucleotide

• Length: 945 bp

>NTDB_id=1063910 ACG3JM_RS00245 WP_003104982.1 49072..50016(+) (amiF) [Streptococcus parauberis strain DB-M11]
ATGTCTGAGAAGCTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTTGCTGTTAAAAA
TGCCAATTTCTTTATTAATCGAGGGGAAACTTTTTCTTTGGTTGGTGAGTCAGGAAGTGGGAAAACAACAATTGGGCGTG
CTATCATTGGTTTAAATGATACGAGTTCAGGTGAAATCATTTATGATGGTAAACAAATCAATAAGAAAAAAAGTAATTCA
GAACGTGAAGAATTAATTAAAAAGATTCAAATGATCTTTCAAGATCCAGCAGCAAGTTTGAATGAACGTGCAACTGTTGA
CTATATTATTTCTGAAGGACTATACAATCATAAACTGTTCAAAAGTGAAGAAGAACGTAAAGATAAAATCAAAAACATGA
TGACAGAAGTTGGACTTTTGTCTGAACATTTAACACGTTATCCTCATGAATTTTCAGGTGGACAACGTCAGCGTATCGGG
ATTGCGCGTGCTTTAGTTATGGATCCAGAATTCATTATTGCTGATGAGCCTATCTCGGCTCTAGACGTTTCGGTTCGAGC
TCAGGTGCTAAATCTTCTAAAACGGATGCAAAGAGAAAAAGGTTTAACTTATCTCTTTATTGCCCATGATTTATCAGTAG
TTCGGTTCATATCTGATCGAATCGCAGTTATTCATAAAGGTGTTATTGTAGAAGTAGCTGAAACTGAAGAATTATTTATC
AATCCAGTTCATCCATATACTAAATCTCTATTATCCGCTGTACCGATTCCGGATCCAATTTTGGAAAGACAGAAGAAACT
TCTTGTCTATAACGTTGATCAGCATGACTATACAGTTGACAAACCAGAAATGGTAGAAATCCAACCAGGTCATTTCGTTT
GGGCGAATAAATTAGAAACAGAGAAATATAAAAAGGAAATTGCTGATAGACAGCAGTCCAACTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	81.699	97.452	0.796
amiF	Streptococcus thermophilus LMD-9	81.373	97.452	0.793
amiF	Streptococcus salivarius strain HSISS4	81.046	97.452	0.79