Detailed information NTG1063823

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JJ_RS03210
• Genome accession: NZ_CP171733
• Coordinates: 599408..600343 (+)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M5
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 594408..605343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JJ_RS03190 (ACG3JJ_03190)	-	594661..596319 (+)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-
ACG3JJ_RS03195 (ACG3JJ_03195)	-	596395..597309 (+)	915	WP_004347295.1	ABC transporter permease	-
ACG3JJ_RS03200 (ACG3JJ_03200)	-	597319..598350 (+)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JJ_RS03205 (ACG3JJ_03205)	oppD	598365..599408 (+)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JJ_RS03210 (ACG3JJ_03210)	amiF	599408..600343 (+)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JJ_RS03215 (ACG3JJ_03215)	rnjA	600409..602091 (-)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JJ_RS03220 (ACG3JJ_03220)	-	602093..602323 (-)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JJ_RS03225 (ACG3JJ_03225)	tsaB	602596..603288 (+)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JJ_RS03230 (ACG3JJ_03230)	rimI	603293..603709 (+)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JJ_RS03235 (ACG3JJ_03235)	tsaD	603699..604712 (+)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1063823 ACG3JJ_RS03210 WP_013794449.1 599408..600343(+) (amiF) [Streptococcus parauberis strain DB-M5]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1063823 ACG3JJ_RS03210 WP_013794449.1 599408..600343(+) (amiF) [Streptococcus parauberis strain DB-M5]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527