Detailed information NTG1063772

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JF_RS05215
• Genome accession: NZ_CP171732
• Coordinates: 1062470..1063405 (-)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M3
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1057470..1068405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JF_RS05190 (ACG3JF_05190)	tsaD	1058101..1059114 (-)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
ACG3JF_RS05195 (ACG3JF_05195)	rimI	1059104..1059520 (-)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JF_RS05200 (ACG3JF_05200)	tsaB	1059525..1060217 (-)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JF_RS05205 (ACG3JF_05205)	-	1060490..1060720 (+)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JF_RS05210 (ACG3JF_05210)	rnjA	1060722..1062404 (+)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JF_RS05215 (ACG3JF_05215)	amiF	1062470..1063405 (-)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JF_RS05220 (ACG3JF_05220)	oppD	1063405..1064448 (-)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JF_RS05225 (ACG3JF_05225)	-	1064463..1065494 (-)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JF_RS05230 (ACG3JF_05230)	-	1065504..1066418 (-)	915	WP_004347295.1	ABC transporter permease	-
ACG3JF_RS05235 (ACG3JF_05235)	-	1066494..1068152 (-)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1063772 ACG3JF_RS05215 WP_013794449.1 1062470..1063405(-) (amiF) [Streptococcus parauberis strain DB-M3]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1063772 ACG3JF_RS05215 WP_013794449.1 1062470..1063405(-) (amiF) [Streptococcus parauberis strain DB-M3]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527