Detailed information NTG1063749

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: ACG3JH_RS08975
• Genome accession: NZ_CP171731
• Coordinates: 1748588..1749523 (+)
• Length: 311 a.a.
• NCBI ID: WP_013794449.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M1
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1743588..1754523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JH_RS08955 (ACG3JH_08955)	-	1743841..1745499 (+)	1659	WP_013794450.1	peptide ABC transporter substrate-binding protein	-
ACG3JH_RS08960 (ACG3JH_08960)	-	1745575..1746489 (+)	915	WP_004347295.1	ABC transporter permease	-
ACG3JH_RS08965 (ACG3JH_08965)	-	1746499..1747530 (+)	1032	WP_003107717.1	ABC transporter permease	-
ACG3JH_RS08970 (ACG3JH_08970)	oppD	1747545..1748588 (+)	1044	WP_003103717.1	ABC transporter ATP-binding protein	Regulator
ACG3JH_RS08975 (ACG3JH_08975)	amiF	1748588..1749523 (+)	936	WP_013794449.1	ABC transporter ATP-binding protein	Regulator
ACG3JH_RS08980 (ACG3JH_08980)	rnjA	1749589..1751271 (-)	1683	WP_003107714.1	ribonuclease J1	-
ACG3JH_RS08985 (ACG3JH_08985)	-	1751273..1751503 (-)	231	WP_003102975.1	DNA-dependent RNA polymerase subunit epsilon	-
ACG3JH_RS08990 (ACG3JH_08990)	tsaB	1751776..1752468 (+)	693	WP_304951726.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
ACG3JH_RS08995 (ACG3JH_08995)	rimI	1752473..1752889 (+)	417	WP_003105855.1	ribosomal protein S18-alanine N-acetyltransferase	-
ACG3JH_RS09000 (ACG3JH_09000)	tsaD	1752879..1753892 (+)	1014	WP_003105067.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35219.18 Da
• Isoelectric Point: 6.5131

>NTDB_id=1063749 ACG3JH_RS08975 WP_013794449.1 1748588..1749523(+) (amiF) [Streptococcus parauberis strain DB-M1]
MTEERKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYEITDGEIIFNGVNITKL
KGKELHNFRKDAQMIFQDPQASLNGRMKIRDIIAEGLDIHGLTKTKEEREARVQELLDRVGLNKDHVTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQTERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTRSLLSAIPEPDPDYERQRVAEIYDPSIELDGKEREMREITPGHFVFSTEEEAVAYKANSNK

Nucleotide

• Length: 936 bp

>NTDB_id=1063749 ACG3JH_RS08975 WP_013794449.1 1748588..1749523(+) (amiF) [Streptococcus parauberis strain DB-M1]
ATGACTGAAGAACGTAAAAAATTAGTTGAACTAAAAAACGTTTCTTTAACCTTTAATAAAGGGAAAAGCAACGAAGTCAA
GGCCATTAATAATGTCAGTTTTGATATCTATGAAGGTGAAGTCTTTGGATTAGTTGGGGAATCAGGTTCTGGTAAAACAA
CAGTTGGCCGTGCTATCTTAAAACTTTATGAAATTACCGATGGCGAAATTATTTTCAATGGTGTAAATATCACTAAACTA
AAAGGAAAAGAACTTCATAATTTCCGTAAAGATGCACAAATGATTTTCCAAGATCCACAAGCAAGTCTTAATGGACGGAT
GAAAATTAGAGACATCATTGCTGAAGGACTAGATATTCATGGTTTAACTAAAACAAAGGAAGAACGTGAAGCTCGTGTTC
AAGAACTACTTGACCGTGTTGGTTTGAATAAAGACCATGTGACTCGTTATCCACATGAATTTTCAGGAGGACAACGTCAA
CGTATTGGTATTGCCCGTGCCTTGGCTGTAAAACCCAAATTTATCATTGCTGATGAACCAATTTCTGCTTTGGACGTATC
TATCCAAGCACAGGTTGTTAACTTGATGCAAAAATTACAAACTGAACGTGGTTTAACCTACTTGTTTATCGCCCATGATT
TATCAATGGTTAAATACATTTCAGATCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGGACATCTGAAGAT
GTTTATAATAACCCAATTCACCCATATACAAGAAGTCTCTTATCAGCTATTCCTGAACCAGACCCAGATTATGAACGCCA
ACGTGTTGCGGAAATTTATGATCCAAGTATTGAATTGGATGGAAAAGAACGTGAAATGCGTGAAATCACACCAGGTCACT
TCGTATTTTCAACAGAAGAAGAAGCAGTAGCTTACAAAGCAAATTCAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.221	99.035	0.537
amiF	Streptococcus thermophilus LMG 18311	53.896	99.035	0.534
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527