Detailed information NTG1063369

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACGLYC_RS08460
• Genome accession: NZ_CP171691
• Coordinates: 1653399..1654178 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain K12
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1648399..1659178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGLYC_RS08440 (ACGLYC_08440)	trmFO	1649086..1650393 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACGLYC_RS08445 (ACGLYC_08445)	xerC	1650463..1651380 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACGLYC_RS08450 (ACGLYC_08450)	hslV	1651396..1651941 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACGLYC_RS08455 (ACGLYC_08455)	hslU	1651958..1653361 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACGLYC_RS08460 (ACGLYC_08460)	codY	1653399..1654178 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACGLYC_RS08465 (ACGLYC_08465)	flgB	1654532..1654921 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACGLYC_RS08470 (ACGLYC_08470)	flgC	1654921..1655373 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACGLYC_RS08475 (ACGLYC_08475)	fliE	1655384..1655704 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACGLYC_RS08480 (ACGLYC_08480)	fliF	1655747..1657357 (+)	1611	WP_032866060.1	flagellar basal-body MS-ring/collar protein FliF	-
ACGLYC_RS08485 (ACGLYC_08485)	fliG	1657370..1658386 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACGLYC_RS08490 (ACGLYC_08490)	fliH	1658379..1659134 (+)	756	WP_032866059.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1063369 ACGLYC_RS08460 WP_003154263.1 1653399..1654178(+) (codY) [Bacillus velezensis strain K12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1063369 ACGLYC_RS08460 WP_003154263.1 1653399..1654178(+) (codY) [Bacillus velezensis strain K12]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471