Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ACG4IU_RS11850 Genome accession   NZ_CP171664
Coordinates   2597129..2597647 (-) Length   172 a.a.
NCBI ID   WP_000792032.1    Uniprot ID   -
Organism   Vibrio cholerae strain M813     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2592129..2602647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IU_RS11835 aroB 2593564..2594649 (-) 1086 WP_000439805.1 3-dehydroquinate synthase -
  ACG4IU_RS11840 aroK 2594677..2595201 (-) 525 WP_000818616.1 shikimate kinase AroK -
  ACG4IU_RS11845 pilQ 2595388..2597103 (-) 1716 WP_000788426.1 type IV pilus secretin PilQ Machinery gene
  ACG4IU_RS11850 pilP 2597129..2597647 (-) 519 WP_000792032.1 pilus assembly protein PilP Machinery gene
  ACG4IU_RS11855 pilO 2597637..2598227 (-) 591 WP_000157690.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACG4IU_RS11860 pilN 2598220..2598804 (-) 585 WP_000902745.1 PilN domain-containing protein Machinery gene
  ACG4IU_RS11865 pilM 2598794..2599810 (-) 1017 WP_000520444.1 type IV pilus assembly protein PilM Machinery gene
  ACG4IU_RS11870 - 2599953..2602430 (+) 2478 WP_000668733.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19084.25 Da        Isoelectric Point: 10.0857

>NTDB_id=1062738 ACG4IU_RS11850 WP_000792032.1 2597129..2597647(-) (pilP) [Vibrio cholerae strain M813]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1062738 ACG4IU_RS11850 WP_000792032.1 2597129..2597647(-) (pilP) [Vibrio cholerae strain M813]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

100

100

1
  pilP Vibrio campbellii strain DS40M4

56.395

100

0.564

Multiple sequence alignment