Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ACGTGP_RS07390 Genome accession   NZ_CP171398
Coordinates   1601815..1602816 (-) Length   333 a.a.
NCBI ID   WP_023896140.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1596815..1607816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS07380 (ACGTGP_07380) pilY1 1597134..1600988 (-) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  ACGTGP_RS07385 (ACGTGP_07385) pilX 1601000..1601818 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACGTGP_RS07390 (ACGTGP_07390) pilW 1601815..1602816 (-) 1002 WP_023896140.1 PilW family protein Machinery gene
  ACGTGP_RS07395 (ACGTGP_07395) pilV 1602817..1603377 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACGTGP_RS07400 (ACGTGP_07400) fimU 1603371..1603844 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACGTGP_RS07405 (ACGTGP_07405) ispH 1604014..1604964 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACGTGP_RS07410 (ACGTGP_07410) gmk 1605087..1605716 (+) 630 WP_000015937.1 guanylate kinase -
  ACGTGP_RS07415 (ACGTGP_07415) rpoZ 1605789..1606067 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACGTGP_RS07420 (ACGTGP_07420) - 1606106..1606236 (+) 131 Protein_1466 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35818.47 Da        Isoelectric Point: 6.1010

>NTDB_id=1061134 ACGTGP_RS07390 WP_023896140.1 1601815..1602816(-) (pilW) [Acinetobacter baumannii strain T24]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTANNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGTKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRNRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1061134 ACGTGP_RS07390 WP_023896140.1 1601815..1602816(-) (pilW) [Acinetobacter baumannii strain T24]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGCGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTACGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAAATCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.099

100

0.991

Multiple sequence alignment