Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DX05_RS10115 Genome accession   NZ_CP007572
Coordinates   2034066..2035334 (+) Length   422 a.a.
NCBI ID   WP_000774764.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2029066..2040334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DX05_RS10080 (DX05_10220) prmA 2029234..2030187 (-) 954 WP_001099292.1 50S ribosomal protein L11 methyltransferase -
  DX05_RS10085 (DX05_10225) - 2030203..2031285 (-) 1083 WP_000203894.1 hypothetical protein -
  DX05_RS10090 (DX05_10230) - 2031278..2031712 (-) 435 WP_000364821.1 NUDIX hydrolase -
  DX05_RS10095 (DX05_10235) - 2031718..2032188 (-) 471 WP_001051337.1 DUF3013 family protein -
  DX05_RS10100 (DX05_10240) - 2032262..2032789 (-) 528 WP_001031087.1 DUF3278 domain-containing protein -
  DX05_RS10105 (DX05_10245) - 2032792..2032980 (-) 189 WP_001082464.1 helix-turn-helix domain-containing protein -
  DX05_RS10110 (DX05_10250) - 2033582..2034073 (+) 492 WP_025194498.1 GNAT family N-acetyltransferase -
  DX05_RS10115 (DX05_10255) rarA 2034066..2035334 (+) 1269 WP_000774764.1 replication-associated recombination protein A Machinery gene
  DX05_RS12415 - 2035736..2035930 (-) 195 Protein_1937 tyrosine-type recombinase/integrase -
  DX05_RS12420 - 2035970..2036113 (-) 144 Protein_1938 hypothetical protein -
  DX05_RS12305 (DX05_10270) - 2036128..2036406 (-) 279 WP_001870649.1 hypothetical protein -
  DX05_RS10135 (DX05_10275) - 2036403..2036789 (-) 387 WP_000731525.1 DUF1310 family protein -
  DX05_RS10140 (DX05_10280) - 2036896..2037468 (-) 573 WP_000622531.1 hypothetical protein -
  DX05_RS10145 (DX05_10285) - 2037470..2037802 (-) 333 WP_000792756.1 hypothetical protein -
  DX05_RS10150 (DX05_10290) - 2038090..2038500 (-) 411 WP_306806831.1 hypothetical protein -
  DX05_RS10155 (DX05_10295) - 2038649..2039503 (-) 855 WP_001204134.1 aminoglycoside 6-adenylyltransferase -
  DX05_RS10160 (DX05_10300) - 2039681..2040073 (-) 393 WP_001191785.1 DUF2785 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46612.05 Da        Isoelectric Point: 6.5117

>NTDB_id=106069 DX05_RS10115 WP_000774764.1 2034066..2035334(+) (rarA) [Streptococcus agalactiae strain GBS6]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDASLADLRRSGNLPIPRHLRDGHYSGSKILGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=106069 DX05_RS10115 WP_000774764.1 2034066..2035334(+) (rarA) [Streptococcus agalactiae strain GBS6]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGACAACAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCTGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCCAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCATCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAATCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.472

98.815

0.588