Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACF0HW_RS10300 Genome accession   NZ_CP171208
Coordinates   2108357..2109136 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain HN11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2103357..2114136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS10270 fliH 2103401..2104156 (-) 756 WP_023356896.1 flagellar assembly protein FliH -
  ACF0HW_RS10275 fliG 2104149..2105165 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACF0HW_RS10280 fliF 2105178..2106788 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  ACF0HW_RS10285 fliE 2106831..2107151 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACF0HW_RS10290 flgC 2107162..2107614 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACF0HW_RS10295 flgB 2107614..2108003 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACF0HW_RS10300 codY 2108357..2109136 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACF0HW_RS10305 hslU 2109174..2110577 (-) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  ACF0HW_RS10310 hslV 2110594..2111139 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACF0HW_RS10315 xerC 2111155..2112072 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACF0HW_RS10320 trmFO 2112142..2113449 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1060485 ACF0HW_RS10300 WP_003154263.1 2108357..2109136(-) (codY) [Bacillus amyloliquefaciens strain HN11]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1060485 ACF0HW_RS10300 WP_003154263.1 2108357..2109136(-) (codY) [Bacillus amyloliquefaciens strain HN11]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment