Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACF3N7_RS02235 Genome accession   NZ_CP171011
Coordinates   436482..437132 (-) Length   216 a.a.
NCBI ID   WP_392437580.1    Uniprot ID   -
Organism   Cruoricaptor ignavus strain WGS2074     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431482..442132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3N7_RS02215 (ACF3N7_02215) - 432452..434308 (+) 1857 WP_392437577.1 lysophospholipid acyltransferase family protein -
  ACF3N7_RS02225 (ACF3N7_02225) der 434519..435826 (+) 1308 WP_392437578.1 ribosome biogenesis GTPase Der -
  ACF3N7_RS02230 (ACF3N7_02230) upp 435838..436485 (+) 648 WP_392437579.1 uracil phosphoribosyltransferase -
  ACF3N7_RS02235 (ACF3N7_02235) comF 436482..437132 (-) 651 WP_392437580.1 ComF family protein Machinery gene
  ACF3N7_RS02240 (ACF3N7_02240) - 437248..437691 (+) 444 WP_392437582.1 6-pyruvoyl tetrahydropterin synthase family protein -
  ACF3N7_RS02245 (ACF3N7_02245) - 437693..438463 (+) 771 WP_392437583.1 UDP-2,3-diacylglucosamine diphosphatase -
  ACF3N7_RS02250 (ACF3N7_02250) - 438544..438936 (+) 393 WP_317173238.1 GxxExxY protein -
  ACF3N7_RS02255 (ACF3N7_02255) - 439669..440670 (+) 1002 WP_392437584.1 acyl transferase -
  ACF3N7_RS02260 (ACF3N7_02260) - 440670..441221 (+) 552 WP_392437585.1 hypothetical protein -
  ACF3N7_RS02265 (ACF3N7_02265) - 441264..441995 (+) 732 WP_392437586.1 DUF4230 domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25040.26 Da        Isoelectric Point: 9.7070

>NTDB_id=1060020 ACF3N7_RS02235 WP_392437580.1 436482..437132(-) (comF) [Cruoricaptor ignavus strain WGS2074]
MLLDLLLPNRCLHCNRIIPAAMPVCEACEAQIHYTHWNFDGKNPLAQKCRMLFPTEKAFALMHFGKDGLSRELIHSLKYR
QREILGKMLAERVAERVIFDDDKPQLIASVPLHPKKLRQRGYNQLHLFADALSEKWKIPHDKNLLKRNIHKKSQATSKFD
ERFKTQNLFSLTKTIENQHIMVVDDVFTTGNTMASIAWEFLKSEGNRVSVLVMAMD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1060020 ACF3N7_RS02235 WP_392437580.1 436482..437132(-) (comF) [Cruoricaptor ignavus strain WGS2074]
ATGCTTCTCGATTTGCTGCTACCGAACCGCTGCCTGCATTGCAACCGCATCATCCCTGCTGCAATGCCGGTTTGCGAAGC
CTGCGAAGCGCAAATCCATTACACCCACTGGAATTTCGACGGTAAAAATCCGCTGGCGCAAAAATGCCGGATGCTCTTCC
CTACCGAAAAAGCCTTCGCGCTAATGCATTTCGGCAAGGATGGGCTGAGCCGCGAACTCATCCACAGCCTGAAATACAGG
CAGCGCGAAATTCTTGGGAAAATGCTTGCCGAGCGAGTTGCCGAGCGCGTTATTTTTGATGACGACAAACCGCAGCTGAT
AGCATCGGTGCCGCTTCATCCTAAAAAACTCCGCCAGCGCGGCTACAATCAGCTGCATCTTTTTGCGGATGCTTTGTCGG
AAAAATGGAAAATTCCGCACGATAAAAATTTGCTGAAAAGAAACATCCACAAAAAATCCCAAGCCACCAGTAAATTTGAC
GAGAGATTTAAAACGCAAAACCTTTTTAGCCTCACTAAAACAATTGAAAATCAGCACATTATGGTTGTAGATGATGTATT
CACCACGGGCAATACGATGGCAAGCATTGCGTGGGAATTCCTGAAATCGGAAGGCAACAGGGTGAGCGTTTTGGTAATGG
CAATGGATTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.074

100

0.491

Multiple sequence alignment