Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACFKHK_RS06320 Genome accession   NZ_CP170760
Coordinates   1203063..1203902 (-) Length   279 a.a.
NCBI ID   WP_392461419.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1198063..1208902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS06305 pheT 1198151..1200550 (-) 2400 WP_392461415.1 phenylalanine--tRNA ligase subunit beta -
  ACFKHK_RS06310 - 1200552..1201073 (-) 522 WP_171988702.1 GNAT family N-acetyltransferase -
  ACFKHK_RS06315 pheS 1201718..1202761 (-) 1044 WP_392461417.1 phenylalanine--tRNA ligase subunit alpha -
  ACFKHK_RS06320 endA 1203063..1203902 (-) 840 WP_392461419.1 DNA/RNA non-specific endonuclease Machinery gene
  ACFKHK_RS06325 - 1203932..1204123 (-) 192 WP_172037141.1 DNA-directed RNA polymerase subunit beta -
  ACFKHK_RS06330 murA 1204116..1205399 (-) 1284 WP_392461421.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFKHK_RS06335 - 1205422..1205649 (-) 228 WP_171988707.1 DUF1146 family protein -
  ACFKHK_RS06340 - 1205709..1206125 (-) 417 WP_171988708.1 F0F1 ATP synthase subunit epsilon -
  ACFKHK_RS06345 atpD 1206135..1207541 (-) 1407 WP_216806657.1 F0F1 ATP synthase subunit beta -
  ACFKHK_RS06350 - 1207563..1208441 (-) 879 WP_171988710.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30194.50 Da        Isoelectric Point: 6.7655

>NTDB_id=1059267 ACFKHK_RS06320 WP_392461419.1 1203063..1203902(-) (endA) [Streptococcus parasuis strain FZ2]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSRNVADYSYYVNRSKASEGTPSQELANSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTELDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREATGNGRTSWTPAGWHQIHDLPGEYDHA
VDRGHLLGYALIGGLAGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1059267 ACFKHK_RS06320 WP_392461419.1 1203063..1203902(-) (endA) [Streptococcus parasuis strain FZ2]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTTTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGCGATAACAAGAGCAGGAACGTTGCTGATTATTCCTATTATGTCAATCGGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAATTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGGAATCAAACGGAATTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTTCAGGGAGAAACGGTTCCAACGGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGATCGTGAAG
CAACTGGTAATGGACGTACGTCATGGACTCCTGCTGGCTGGCACCAAATTCATGATTTGCCAGGGGAATATGATCATGCA
GTTGATCGTGGACATCTTTTAGGCTATGCCTTGATTGGTGGTCTTGCTGGATTTGATGCCTCAACAAGTAATCCCAAAAA
CATAGCGGTTCAAACTGCCTGGTCTAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAAATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGTCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTGAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.513

83.871

0.591
  endA Streptococcus pneumoniae D39

70.513

83.871

0.591
  endA Streptococcus pneumoniae R6

70.513

83.871

0.591
  endA Streptococcus pneumoniae TIGR4

70.513

83.871

0.591

Multiple sequence alignment