Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFXAC_RS11815 | Genome accession | NZ_CP170720 |
| Coordinates | 2466879..2467916 (-) | Length | 345 a.a. |
| NCBI ID | WP_053573197.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain JP5006 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2461879..2472916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFXAC_RS11765 (ACFXAC_11765) | tasA | 2462113..2462898 (-) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| ACFXAC_RS11770 (ACFXAC_11770) | sipW | 2462963..2463547 (-) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| ACFXAC_RS11775 (ACFXAC_11775) | tapA | 2463519..2464190 (-) | 672 | WP_053573199.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFXAC_RS11780 (ACFXAC_11780) | - | 2464449..2464778 (+) | 330 | WP_039254490.1 | DUF3889 domain-containing protein | - |
| ACFXAC_RS11785 (ACFXAC_11785) | - | 2464818..2464997 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACFXAC_RS11790 (ACFXAC_11790) | comGG | 2465054..2465431 (-) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACFXAC_RS11795 (ACFXAC_11795) | comGF | 2465432..2465932 (-) | 501 | WP_256052909.1 | competence type IV pilus minor pilin ComGF | - |
| ACFXAC_RS11800 (ACFXAC_11800) | comGE | 2465841..2466155 (-) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| ACFXAC_RS11805 (ACFXAC_11805) | comGD | 2466139..2466576 (-) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACFXAC_RS11810 (ACFXAC_11810) | comGC | 2466566..2466874 (-) | 309 | WP_079979070.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFXAC_RS11815 (ACFXAC_11815) | comGB | 2466879..2467916 (-) | 1038 | WP_053573197.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFXAC_RS11820 (ACFXAC_11820) | comGA | 2467903..2468973 (-) | 1071 | WP_053573196.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFXAC_RS11825 (ACFXAC_11825) | - | 2469166..2470116 (-) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| ACFXAC_RS11830 (ACFXAC_11830) | - | 2470262..2471563 (+) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| ACFXAC_RS11835 (ACFXAC_11835) | - | 2471601..2472431 (-) | 831 | WP_053573195.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39586.97 Da Isoelectric Point: 9.6788
>NTDB_id=1058820 ACFXAC_RS11815 WP_053573197.1 2466879..2467916(-) (comGB) [Bacillus amyloliquefaciens strain JP5006]
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
MKRIKRTWPLKDQAAFLKRLGGMTEKGYSLIEGLRLLQLQLHKRQLAELKEGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLIFSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=1058820 ACFXAC_RS11815 WP_053573197.1 2466879..2467916(-) (comGB) [Bacillus amyloliquefaciens strain JP5006]
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAACGAACATGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGGAATGACGGAAAAAGG
ATACAGCCTGATTGAAGGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGAAGGAAGGAATCC
GCCGGCTGAGAGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTTTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TTATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACGTCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTTTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATACCACTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCGATCTATGACAGCTTAACAGCTTTTAAAGAGCAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
65.635 |
93.623 |
0.614 |