Detailed information NTG1058808

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFXAC_RS07975
• Genome accession: NZ_CP170720
• Coordinates: 1601545..1602324 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JP5006
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1596545..1607324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAC_RS07955 (ACFXAC_07955)	trmFO	1597232..1598539 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACFXAC_RS07960 (ACFXAC_07960)	xerC	1598609..1599526 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACFXAC_RS07965 (ACFXAC_07965)	hslV	1599542..1600087 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACFXAC_RS07970 (ACFXAC_07970)	hslU	1600104..1601507 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACFXAC_RS07975 (ACFXAC_07975)	codY	1601545..1602324 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFXAC_RS07980 (ACFXAC_07980)	flgB	1602678..1603067 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFXAC_RS07985 (ACFXAC_07985)	flgC	1603067..1603519 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACFXAC_RS07990 (ACFXAC_07990)	fliE	1603530..1603850 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFXAC_RS07995 (ACFXAC_07995)	fliF	1603893..1605503 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFXAC_RS08000 (ACFXAC_08000)	fliG	1605516..1606532 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFXAC_RS08005 (ACFXAC_08005)	fliH	1606525..1607280 (+)	756	WP_053573438.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058808 ACFXAC_RS07975 WP_003154263.1 1601545..1602324(+) (codY) [Bacillus amyloliquefaciens strain JP5006]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058808 ACFXAC_RS07975 WP_003154263.1 1601545..1602324(+) (codY) [Bacillus amyloliquefaciens strain JP5006]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471