Detailed information NTG1058708

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFW98_RS01965
• Genome accession: NZ_CP170719
• Coordinates: 413984..414763 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JP5008
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 408984..419763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW98_RS01945 (ACFW98_01945)	trmFO	409671..410978 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACFW98_RS01950 (ACFW98_01950)	xerC	411048..411965 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACFW98_RS01955 (ACFW98_01955)	hslV	411981..412526 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACFW98_RS01960 (ACFW98_01960)	hslU	412543..413946 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACFW98_RS01965 (ACFW98_01965)	codY	413984..414763 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFW98_RS01970 (ACFW98_01970)	flgB	415117..415506 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFW98_RS01975 (ACFW98_01975)	flgC	415506..415958 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACFW98_RS01980 (ACFW98_01980)	fliE	415969..416289 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFW98_RS01985 (ACFW98_01985)	fliF	416332..417942 (+)	1611	WP_032871472.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFW98_RS01990 (ACFW98_01990)	fliG	417955..418971 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFW98_RS01995 (ACFW98_01995)	fliH	418964..419719 (+)	756	WP_032866059.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058708 ACFW98_RS01965 WP_003154263.1 413984..414763(+) (codY) [Bacillus amyloliquefaciens strain JP5008]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058708 ACFW98_RS01965 WP_003154263.1 413984..414763(+) (codY) [Bacillus amyloliquefaciens strain JP5008]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCTTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471