Detailed information NTG1058629

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFXAA_RS03135
• Genome accession: NZ_CP170717
• Coordinates: 711117..711896 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JP5014
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 706117..716896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAA_RS03105 (ACFXAA_03105)	fliH	706161..706916 (-)	756	WP_015417466.1	flagellar assembly protein FliH	-
ACFXAA_RS03110 (ACFXAA_03110)	fliG	706909..707925 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFXAA_RS03115 (ACFXAA_03115)	fliF	707938..709548 (-)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFXAA_RS03120 (ACFXAA_03120)	fliE	709591..709911 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFXAA_RS03125 (ACFXAA_03125)	flgC	709922..710374 (-)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACFXAA_RS03130 (ACFXAA_03130)	flgB	710374..710763 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFXAA_RS03135 (ACFXAA_03135)	codY	711117..711896 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFXAA_RS03140 (ACFXAA_03140)	hslU	711934..713337 (-)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACFXAA_RS03145 (ACFXAA_03145)	hslV	713354..713899 (-)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACFXAA_RS03150 (ACFXAA_03150)	xerC	713915..714832 (-)	918	WP_039251511.1	tyrosine recombinase XerC	-
ACFXAA_RS03155 (ACFXAA_03155)	trmFO	714902..716209 (-)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058629 ACFXAA_RS03135 WP_003154263.1 711117..711896(-) (codY) [Bacillus amyloliquefaciens strain JP5014]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058629 ACFXAA_RS03135 WP_003154263.1 711117..711896(-) (codY) [Bacillus amyloliquefaciens strain JP5014]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471