Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACFYH6_RS09795 Genome accession   NZ_CP170704
Coordinates   2076099..2077958 (-) Length   619 a.a.
NCBI ID   WP_316342832.1    Uniprot ID   -
Organism   Clostridium sp. HCS.1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2071099..2082958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFYH6_RS09775 (ACFYH6_09775) - 2071151..2072167 (-) 1017 WP_416178509.1 LacI family DNA-binding transcriptional regulator -
  ACFYH6_RS09780 (ACFYH6_09780) galT 2072245..2073762 (-) 1518 WP_416178510.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  ACFYH6_RS09785 (ACFYH6_09785) galE 2073770..2074756 (-) 987 WP_316342834.1 UDP-glucose 4-epimerase GalE -
  ACFYH6_RS09790 (ACFYH6_09790) - 2074768..2075931 (-) 1164 WP_416178511.1 galactokinase -
  ACFYH6_RS09795 (ACFYH6_09795) rcrQ 2076099..2077958 (-) 1860 WP_316342832.1 ABC transporter ATP-binding protein Regulator
  ACFYH6_RS09800 (ACFYH6_09800) - 2077955..2080192 (-) 2238 WP_316342857.1 ABC transporter ATP-binding protein -
  ACFYH6_RS09805 (ACFYH6_09805) - 2080336..2080779 (+) 444 WP_316344792.1 MarR family transcriptional regulator -
  ACFYH6_RS09810 (ACFYH6_09810) - 2080924..2081127 (-) 204 WP_316344794.1 heavy-metal-associated domain-containing protein -
  ACFYH6_RS09815 (ACFYH6_09815) - 2081145..2081411 (-) 267 WP_291707428.1 metal-sensing transcriptional repressor -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68550.41 Da        Isoelectric Point: 7.6705

>NTDB_id=1058611 ACFYH6_RS09795 WP_316342832.1 2076099..2077958(-) (rcrQ) [Clostridium sp. HCS.1]
MSKNVGGKKHGGFGGPMGGIKPVGEKAKDFKGTFKKLLNYLKPYRISILIVLIFAIGSAAFSIIGPKILGKATTKLFEGL
LNKISGEAGAGIDFTYIGNILVILTVLYAVSAIFAFIQGFIMSGIAQKVSYNLRKAISLKINKMPLKYFDKMTHGEVLSR
VTNDVDTISNTLNQSLSQVFTSITTLIGVVIMMLSISVTMTIVALLIVPLSGLFISFVVKKSQKYFKEQQKYLGHVNGHV
EEIYSGHNIMKAFNGEDKAVEEFNDLNNTLYNSAWKSQFLSGMMMPIMTFIGNLGYVAVTILGGYLTVKNYIQVGDIQSF
IQYIRSFNQPIAQAAQIANVLQSTAAAAERVFEFLEEEEEVDNAVNPINIEELKGEVTFKDVHFGYNEDKIIINDFSSKI
KPGQRIAIVGPTGAGKTTIVKLLMRFYELNSGEILLDDYNIKDFNRSDLRKIFGMVLQDTWLFNGSIMENIRYGNLEASD
EEVIKAAKAAHVHHFVKTLPDGYNMELNEDASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLM
KGRTSFIIAHRLSTIRDADLILVMNEGDIVEQGTHTELLSKKGFYASLYNSQFENSQVS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=1058611 ACFYH6_RS09795 WP_316342832.1 2076099..2077958(-) (rcrQ) [Clostridium sp. HCS.1]
ATGAGTAAGAATGTAGGCGGAAAAAAACATGGTGGCTTTGGTGGTCCAATGGGAGGAATAAAACCTGTTGGTGAAAAAGC
CAAAGATTTTAAAGGTACCTTTAAAAAATTATTAAATTATTTAAAGCCCTATAGAATATCAATATTAATAGTTTTAATTT
TTGCCATTGGTAGTGCAGCCTTTTCTATAATTGGTCCTAAAATTTTAGGAAAAGCTACTACTAAATTGTTTGAAGGGTTA
TTAAATAAAATTTCAGGAGAAGCCGGTGCAGGTATAGACTTTACTTATATAGGAAATATACTTGTTATATTAACAGTTTT
ATATGCTGTAAGTGCAATATTTGCCTTTATTCAAGGATTTATAATGTCAGGTATAGCACAAAAAGTATCATATAATTTGA
GAAAAGCAATATCTTTAAAAATAAATAAAATGCCACTTAAATATTTTGATAAAATGACTCATGGAGAAGTTCTATCAAGA
GTAACAAATGACGTAGATACAATAAGTAATACTTTAAATCAAAGTTTATCTCAAGTATTTACATCTATAACAACTTTAAT
TGGTGTAGTTATTATGATGCTTTCAATAAGTGTTACAATGACAATTGTAGCTTTATTAATAGTTCCACTATCAGGTTTAT
TTATATCATTTGTTGTTAAAAAATCTCAAAAATATTTTAAAGAACAACAAAAATATTTAGGTCATGTAAATGGTCATGTT
GAAGAAATATATAGTGGCCATAATATAATGAAGGCTTTTAATGGCGAAGATAAGGCTGTTGAGGAATTTAATGATTTAAA
TAATACTTTATATAATTCAGCTTGGAAATCTCAATTTTTATCAGGTATGATGATGCCTATAATGACTTTTATAGGAAATT
TAGGGTATGTAGCTGTTACAATTTTAGGTGGATATTTAACGGTTAAAAATTATATACAAGTTGGGGATATACAATCCTTT
ATTCAATATATAAGATCCTTTAATCAACCAATAGCACAAGCAGCTCAAATAGCTAATGTATTACAATCTACTGCTGCAGC
CGCTGAAAGAGTTTTTGAATTTCTTGAAGAGGAAGAAGAAGTTGATAATGCAGTAAATCCAATAAATATAGAAGAACTTA
AAGGAGAAGTTACATTTAAAGATGTACATTTTGGATACAATGAAGATAAGATAATAATTAATGACTTCTCAAGTAAAATA
AAACCAGGCCAAAGAATAGCAATTGTAGGTCCAACTGGTGCTGGTAAAACTACAATTGTAAAATTATTAATGAGATTCTA
TGAATTGAATAGCGGTGAAATATTATTAGATGATTATAATATTAAAGATTTCAATAGAAGTGATTTAAGAAAAATATTTG
GTATGGTACTTCAAGATACTTGGTTATTTAATGGCTCAATAATGGAAAACATCAGATATGGTAACTTAGAAGCAAGTGAT
GAAGAAGTAATTAAAGCTGCAAAAGCTGCTCATGTTCATCATTTTGTTAAAACTCTACCTGATGGATATAATATGGAATT
AAATGAAGATGCAAGTAACGTATCACAAGGACAAAAACAATTACTTACAATAGCTCGTGCCATATTAGCAGATCCTAAAA
TTTTAATATTAGATGAAGCAACAAGTTCTGTTGATACTAGAACAGAAGTGCTTATTCAAAAGGCAATGGATAATTTAATG
AAGGGTAGAACAAGTTTTATAATTGCACATAGATTATCAACTATAAGAGATGCTGATTTAATATTAGTAATGAATGAAGG
AGATATAGTTGAACAAGGAACCCATACAGAGCTATTGAGTAAAAAAGGCTTCTATGCATCACTATATAATAGTCAATTTG
AAAATTCACAAGTTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.286

94.184

0.483

Multiple sequence alignment