Detailed information NTG1058502

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFXAD_RS12555
• Genome accession: NZ_CP170653
• Coordinates: 2560243..2561022 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JP5011
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2555243..2566022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAD_RS12525 (ACFXAD_12525)	fliH	2555287..2556042 (-)	756	WP_053573438.1	flagellar assembly protein FliH	-
ACFXAD_RS12530 (ACFXAD_12530)	fliG	2556035..2557051 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFXAD_RS12535 (ACFXAD_12535)	fliF	2557064..2558674 (-)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFXAD_RS12540 (ACFXAD_12540)	fliE	2558717..2559037 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFXAD_RS12545 (ACFXAD_12545)	flgC	2559048..2559500 (-)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACFXAD_RS12550 (ACFXAD_12550)	flgB	2559500..2559889 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFXAD_RS12555 (ACFXAD_12555)	codY	2560243..2561022 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFXAD_RS12560 (ACFXAD_12560)	hslU	2561060..2562463 (-)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
ACFXAD_RS12565 (ACFXAD_12565)	hslV	2562480..2563025 (-)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACFXAD_RS12570 (ACFXAD_12570)	xerC	2563041..2563958 (-)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACFXAD_RS12575 (ACFXAD_12575)	trmFO	2564028..2565335 (-)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058502 ACFXAD_RS12555 WP_003154263.1 2560243..2561022(-) (codY) [Bacillus amyloliquefaciens strain JP5011]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058502 ACFXAD_RS12555 WP_003154263.1 2560243..2561022(-) (codY) [Bacillus amyloliquefaciens strain JP5011]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471