Detailed information NTG1058408

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFW99_RS08340
• Genome accession: NZ_CP170651
• Coordinates: 1661196..1661975 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain JP5025
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1656196..1666975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFW99_RS08320 (ACFW99_08320)	trmFO	1656883..1658190 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACFW99_RS08325 (ACFW99_08325)	xerC	1658260..1659177 (+)	918	WP_039251511.1	tyrosine recombinase XerC	-
ACFW99_RS08330 (ACFW99_08330)	hslV	1659193..1659738 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACFW99_RS08335 (ACFW99_08335)	hslU	1659755..1661158 (+)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACFW99_RS08340 (ACFW99_08340)	codY	1661196..1661975 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFW99_RS08345 (ACFW99_08345)	flgB	1662329..1662718 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFW99_RS08350 (ACFW99_08350)	flgC	1662718..1663170 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
ACFW99_RS08355 (ACFW99_08355)	fliE	1663181..1663501 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFW99_RS08360 (ACFW99_08360)	fliF	1663544..1665154 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFW99_RS08365 (ACFW99_08365)	fliG	1665167..1666183 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFW99_RS08370 (ACFW99_08370)	fliH	1666176..1666931 (+)	756	WP_015417466.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058408 ACFW99_RS08340 WP_003154263.1 1661196..1661975(+) (codY) [Bacillus amyloliquefaciens strain JP5025]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058408 ACFW99_RS08340 WP_003154263.1 1661196..1661975(+) (codY) [Bacillus amyloliquefaciens strain JP5025]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471