Detailed information NTG1058356

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACFXAB_RS14690
• Genome accession: NZ_CP170650
• Coordinates: 2994068..2994847 (-)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JP5039
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2989068..2999847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAB_RS14660 (ACFXAB_14660)	fliH	2989112..2989867 (-)	756	WP_014417769.1	flagellar assembly protein FliH	-
ACFXAB_RS14665 (ACFXAB_14665)	fliG	2989860..2990876 (-)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACFXAB_RS14670 (ACFXAB_14670)	fliF	2990889..2992499 (-)	1611	WP_014417768.1	flagellar basal-body MS-ring/collar protein FliF	-
ACFXAB_RS14675 (ACFXAB_14675)	fliE	2992542..2992862 (-)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACFXAB_RS14680 (ACFXAB_14680)	flgC	2992873..2993325 (-)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACFXAB_RS14685 (ACFXAB_14685)	flgB	2993325..2993714 (-)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACFXAB_RS14690 (ACFXAB_14690)	codY	2994068..2994847 (-)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACFXAB_RS14695 (ACFXAB_14695)	hslU	2994885..2996288 (-)	1404	WP_007611413.1	HslU--HslV peptidase ATPase subunit	-
ACFXAB_RS14700 (ACFXAB_14700)	hslV	2996305..2996850 (-)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
ACFXAB_RS14705 (ACFXAB_14705)	xerC	2996866..2997783 (-)	918	WP_007409774.1	tyrosine recombinase XerC	-
ACFXAB_RS14710 (ACFXAB_14710)	trmFO	2997853..2999160 (-)	1308	WP_014417766.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1058356 ACFXAB_RS14690 WP_003154263.1 2994068..2994847(-) (codY) [Bacillus velezensis strain JP5039]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1058356 ACFXAB_RS14690 WP_003154263.1 2994068..2994847(-) (codY) [Bacillus velezensis strain JP5039]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471