Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AAA982_RS08895 Genome accession   NZ_AP028601
Coordinates   1725035..1726066 (-) Length   343 a.a.
NCBI ID   WP_000506426.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1720035..1731066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS08845 (TKY113292_17310) - 1720182..1720943 (-) 762 WP_317649130.1 SDR family NAD(P)-dependent oxidoreductase -
  AAA982_RS08850 (TKY113292_17320) ytpR 1720976..1721602 (-) 627 WP_317649131.1 YtpR family tRNA-binding protein -
  AAA982_RS08855 (TKY113292_17330) - 1721618..1721935 (-) 318 WP_000615767.1 thioredoxin family protein -
  AAA982_RS08860 (TKY113292_17340) - 1721932..1722231 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  AAA982_RS08865 - 1722429..1722509 (-) 81 WP_223200442.1 hypothetical protein -
  AAA982_RS08870 - 1722516..1722659 (-) 144 WP_000599602.1 cell wall-binding protein -
  AAA982_RS08875 (TKY113292_17350) - 1722868..1723542 (-) 675 WP_000725719.1 hypothetical protein -
  AAA982_RS08880 (TKY113292_17360) - 1723547..1723993 (-) 447 WP_000776595.1 LytTR family DNA-binding domain-containing protein -
  AAA982_RS08885 - 1724107..1724610 (-) 504 WP_000800945.1 phosphatase PAP2 family protein -
  AAA982_RS08890 (TKY113292_17370) - 1724607..1724969 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  AAA982_RS08895 (TKY113292_17380) rcrQ 1725035..1726066 (-) 1032 WP_000506426.1 ATP-binding cassette domain-containing protein Regulator
  AAA982_RS08900 (TKY113292_17400) - 1726073..1726894 (-) 822 Protein_1740 ABC transporter permease -
  AAA982_RS08905 - 1726911..1727382 (-) 472 Protein_1741 MarR family winged helix-turn-helix transcriptional regulator -
  AAA982_RS08910 (TKY113292_17430) - 1727506..1728222 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AAA982_RS08915 (TKY113292_17440) ply 1729103..1730518 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  AAA982_RS08920 (TKY113292_17450) - 1730529..1730939 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37925.11 Da        Isoelectric Point: 4.4769

>NTDB_id=105828 AAA982_RS08895 WP_000506426.1 1725035..1726066(-) (rcrQ) [Streptococcus pneumoniae strain PF1]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQRVAIVGSTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=105828 AAA982_RS08895 WP_000506426.1 1725035..1726066(-) (rcrQ) [Streptococcus pneumoniae strain PF1]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGTCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment