Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VWC80_RS19595 Genome accession   NZ_CP170495
Coordinates   3830615..3831394 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain IPPBIOTSUC-1012     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3825615..3836394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VWC80_RS19570 (VWC80_19550) uppS 3826363..3827139 (-) 777 WP_000971296.1 isoprenyl transferase -
  VWC80_RS19575 (VWC80_19555) frr 3827225..3827782 (-) 558 WP_000531501.1 ribosome recycling factor -
  VWC80_RS19580 (VWC80_19560) pyrH 3827785..3828507 (-) 723 WP_000042668.1 UMP kinase -
  VWC80_RS19585 (VWC80_19565) tsf 3828574..3829461 (-) 888 WP_001018578.1 translation elongation factor Ts -
  VWC80_RS19590 (VWC80_19570) rpsB 3829565..3830266 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  VWC80_RS19595 (VWC80_19575) codY 3830615..3831394 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VWC80_RS19600 (VWC80_19580) hslU 3831472..3832863 (-) 1392 WP_087875674.1 ATP-dependent protease ATPase subunit HslU -
  VWC80_RS19605 (VWC80_19585) hslV 3832886..3833428 (-) 543 WP_048567505.1 ATP-dependent protease proteolytic subunit HslV -
  VWC80_RS19610 (VWC80_19590) xerC 3833471..3834370 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  VWC80_RS19615 (VWC80_19595) trmFO 3834436..3835740 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1057744 VWC80_RS19595 WP_000421290.1 3830615..3831394(-) (codY) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1057744 VWC80_RS19595 WP_000421290.1 3830615..3831394(-) (codY) [Bacillus thuringiensis strain IPPBIOTSUC-1012]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment