Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACFBML_RS00630 Genome accession   NZ_CP170491
Coordinates   141854..142579 (-) Length   241 a.a.
NCBI ID   WP_390338398.1    Uniprot ID   -
Organism   Vibrio harveyi strain LcV6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136854..147579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFBML_RS00605 (ACFBML_00605) - 138011..138502 (+) 492 WP_005448492.1 type II secretion system protein M -
  ACFBML_RS00610 (ACFBML_00610) - 138504..139265 (+) 762 WP_005448490.1 type II secretion system protein N -
  ACFBML_RS00615 (ACFBML_00615) cysQ 139555..140382 (-) 828 WP_017189961.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACFBML_RS00620 (ACFBML_00620) nudE 140430..140996 (-) 567 WP_390338396.1 ADP compounds hydrolase NudE -
  ACFBML_RS00625 (ACFBML_00625) nfuA 141172..141756 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  ACFBML_RS00630 (ACFBML_00630) comF 141854..142579 (-) 726 WP_390338398.1 ComF family protein Machinery gene
  ACFBML_RS00635 (ACFBML_00635) bioH 142664..143428 (+) 765 WP_390338400.1 pimeloyl-ACP methyl ester esterase BioH -
  ACFBML_RS00640 (ACFBML_00640) - 143565..144029 (+) 465 WP_009700714.1 hypothetical protein -
  ACFBML_RS00645 (ACFBML_00645) - 144154..146475 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27680.75 Da        Isoelectric Point: 8.5728

>NTDB_id=1057668 ACFBML_RS00630 WP_390338398.1 141854..142579(-) (comF) [Vibrio harveyi strain LcV6]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVNFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1057668 ACFBML_RS00630 WP_390338398.1 141854..142579(-) (comF) [Vibrio harveyi strain LcV6]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGAACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGTGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.286

100

0.913
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473

Multiple sequence alignment