Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8569_RS07040 Genome accession   NZ_AP028413
Coordinates   1358313..1358828 (-) Length   171 a.a.
NCBI ID   WP_134250018.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-12448     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353313..1363828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8569_RS07025 (I12448_13790) - 1353410..1355149 (-) 1740 WP_317648212.1 flagellin A -
  R8569_RS07030 (I12448_13800) - 1355233..1357062 (-) 1830 WP_317648213.1 motility associated factor glycosyltransferase family protein -
  R8569_RS07035 (I12448_13810) - 1357072..1358313 (-) 1242 WP_168977613.1 DUF2920 family protein -
  R8569_RS07040 (I12448_13820) ctsG 1358313..1358828 (-) 516 WP_134250018.1 type II secretion system protein Machinery gene
  R8569_RS07045 (I12448_13830) tsaD 1358829..1359836 (-) 1008 WP_317648215.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8569_RS07050 (I12448_13840) - 1359833..1361227 (-) 1395 WP_317648216.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8569_RS07055 (I12448_13850) dxr 1361229..1362299 (-) 1071 WP_317648218.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8569_RS07060 (I12448_13860) cdsA 1362296..1363021 (-) 726 WP_220524637.1 phosphatidate cytidylyltransferase -
  R8569_RS07065 (I12448_13870) - 1363030..1363368 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18694.52 Da        Isoelectric Point: 6.4683

>NTDB_id=105658 R8569_RS07040 WP_134250018.1 1358313..1358828(-) (ctsG) [Campylobacter jejuni strain IDH-12448]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105658 R8569_RS07040 WP_134250018.1 1358313..1358828(-) (ctsG) [Campylobacter jejuni strain IDH-12448]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCTGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGTTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAGGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATTTTAAGCAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

95.322

100

0.953

Multiple sequence alignment