Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   O1Q81_RS04325 Genome accession   NZ_CP170385
Coordinates   890541..890837 (+) Length   98 a.a.
NCBI ID   WP_386695942.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885541..895837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS04280 (O1Q81_00851) tolB 885996..887288 (+) 1293 WP_386689766.1 Tol-Pal system beta propeller repeat protein TolB -
  O1Q81_RS04285 (O1Q81_00852) pal 887311..887769 (+) 459 WP_386689769.1 peptidoglycan-associated lipoprotein Pal -
  O1Q81_RS04310 (O1Q81_00857) comN 888613..889137 (+) 525 WP_386698405.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O1Q81_RS04315 (O1Q81_00858) - 889134..889865 (+) 732 WP_386698407.1 hypothetical protein -
  O1Q81_RS04320 (O1Q81_00859) - 889871..890557 (+) 687 WP_386698408.1 DUF2572 family protein -
  O1Q81_RS04325 (O1Q81_00860) comQ 890541..890837 (+) 297 WP_386695942.1 DUF5374 domain-containing protein Machinery gene
  O1Q81_RS04330 (O1Q81_00861) recC 890871..894266 (+) 3396 WP_386698410.1 exodeoxyribonuclease V subunit gamma -
  O1Q81_RS04335 (O1Q81_00862) - 894339..895559 (+) 1221 WP_386689788.1 ROK family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11168.09 Da        Isoelectric Point: 9.6302

>NTDB_id=1056493 O1Q81_RS04325 WP_386695942.1 890541..890837(+) (comQ) [Lonepinella sp. MS14436]
MILFPKFKQGMGLVTLLVALSLFSGIFLAINQWANIQRKTASEIYQRYQAIQIAENQQQRQFLGLNCESGVEQNQLKFSI
NCIGDKVKVRYILGEISL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1056493 O1Q81_RS04325 WP_386695942.1 890541..890837(+) (comQ) [Lonepinella sp. MS14436]
ATGATTTTATTCCCTAAATTTAAGCAAGGAATGGGGCTTGTGACCTTATTAGTGGCGTTGAGCCTATTTAGTGGCATTTT
TCTTGCTATTAATCAATGGGCGAATATTCAACGCAAAACAGCAAGTGAAATTTATCAACGTTATCAAGCGATTCAAATAG
CGGAAAATCAACAGCAACGGCAATTTTTAGGATTAAATTGTGAAAGTGGAGTAGAGCAAAATCAACTGAAATTCTCCATT
AATTGCATTGGGGATAAGGTAAAAGTGCGGTATATTTTGGGGGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

52.083

97.959

0.51

Multiple sequence alignment