Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8609_RS07000 Genome accession   NZ_AP028412
Coordinates   1367226..1367741 (-) Length   171 a.a.
NCBI ID   WP_002799196.1    Uniprot ID   Q0P8R6
Organism   Campylobacter jejuni strain IDH-12128     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362226..1372741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8609_RS06985 (I12128_13910) - 1362338..1364152 (-) 1815 WP_317694155.1 motility associated factor glycosyltransferase family protein -
  R8609_RS06990 (I12128_13920) - 1364149..1365972 (-) 1824 WP_275549720.1 motility associated factor glycosyltransferase family protein -
  R8609_RS06995 (I12128_13930) - 1365982..1367226 (-) 1245 WP_032584861.1 DUF2920 family protein -
  R8609_RS07000 (I12128_13940) ctsG 1367226..1367741 (-) 516 WP_002799196.1 type II secretion system protein Machinery gene
  R8609_RS07005 (I12128_13950) tsaD 1367742..1368749 (-) 1008 WP_002934877.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8609_RS07010 (I12128_13960) - 1368746..1370140 (-) 1395 WP_002934878.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8609_RS07015 (I12128_13970) dxr 1370142..1371212 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8609_RS07020 (I12128_13980) cdsA 1371209..1371934 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  R8609_RS07025 (I12128_13990) - 1371943..1372281 (-) 339 WP_002934880.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18678.56 Da        Isoelectric Point: 6.4682

>NTDB_id=105630 R8609_RS07000 WP_002799196.1 1367226..1367741(-) (ctsG) [Campylobacter jejuni strain IDH-12128]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105630 R8609_RS07000 WP_002799196.1 1367226..1367741(-) (ctsG) [Campylobacter jejuni strain IDH-12128]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGTTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8R6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment