Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFDA8_RS05960 | Genome accession | NZ_CP170248 |
| Coordinates | 1252990..1254057 (+) | Length | 355 a.a. |
| NCBI ID | WP_161386701.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain PS25 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1247990..1259057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA8_RS05930 (ACFDA8_05925) | - | 1248408..1249868 (+) | 1461 | WP_381402475.1 | rhomboid family intramembrane serine protease | - |
| ACFDA8_RS05935 (ACFDA8_05930) | - | 1249852..1250052 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| ACFDA8_RS05940 (ACFDA8_05935) | - | 1250052..1251038 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| ACFDA8_RS05945 (ACFDA8_05940) | - | 1251038..1251364 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACFDA8_RS05950 (ACFDA8_05945) | - | 1251364..1251987 (+) | 624 | WP_002487003.1 | MBL fold metallo-hydrolase | - |
| ACFDA8_RS05955 (ACFDA8_05950) | comGA | 1252044..1253018 (+) | 975 | WP_381402482.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDA8_RS05960 (ACFDA8_05955) | comGB | 1252990..1254057 (+) | 1068 | WP_161386701.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFDA8_RS05965 (ACFDA8_05960) | comGC | 1254075..1254392 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDA8_RS05970 (ACFDA8_05965) | comGD | 1254382..1254819 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDA8_RS05975 (ACFDA8_05970) | - | 1254806..1255099 (+) | 294 | WP_020367648.1 | hypothetical protein | - |
| ACFDA8_RS05980 (ACFDA8_05975) | - | 1255023..1255514 (+) | 492 | WP_161386702.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDA8_RS05985 (ACFDA8_05980) | - | 1255679..1256191 (+) | 513 | WP_046044250.1 | shikimate kinase | - |
| ACFDA8_RS05990 (ACFDA8_05985) | gcvT | 1256409..1257500 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFDA8_RS05995 (ACFDA8_05990) | gcvPA | 1257520..1258866 (+) | 1347 | WP_162186523.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42305.61 Da Isoelectric Point: 10.0471
>NTDB_id=1055973 ACFDA8_RS05960 WP_161386701.1 1252990..1254057(+) (comGB) [Staphylococcus epidermidis strain PS25]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILIILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILIILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=1055973 ACFDA8_RS05960 WP_161386701.1 1252990..1254057(+) (comGB) [Staphylococcus epidermidis strain PS25]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAATCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAATCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAACCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.438 |
100 |
0.496 |
| comGB | Staphylococcus aureus N315 |
49.438 |
100 |
0.496 |