Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   R8953_RS02200 Genome accession   NZ_AP028409
Coordinates   444712..445227 (+) Length   171 a.a.
NCBI ID   WP_072221092.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439712..450227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS02175 (I11999_04270) - 440171..440509 (+) 339 WP_061210687.1 hypothetical protein -
  R8953_RS02180 (I11999_04280) - 440519..441244 (+) 726 WP_072221096.1 phosphatidate cytidylyltransferase -
  R8953_RS02185 (I11999_04290) dxr 441241..442311 (+) 1071 WP_072221095.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  R8953_RS02190 (I11999_04300) - 442313..443707 (+) 1395 WP_072221094.1 M99 family carboxypeptidase catalytic domain-containing protein -
  R8953_RS02195 (I11999_04310) tsaD 443704..444711 (+) 1008 WP_072221093.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  R8953_RS02200 (I11999_04320) ctsG 444712..445227 (+) 516 WP_072221092.1 type II secretion system protein Machinery gene
  R8953_RS02205 - 445227..446467 (+) 1241 Protein_429 DUF2920 family protein -
  R8953_RS02210 (I11999_04350) - 446477..448300 (+) 1824 WP_317727630.1 motility associated factor glycosyltransferase family protein -
  R8953_RS02215 (I11999_04360) - 448297..450117 (+) 1821 WP_317727631.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18767.53 Da        Isoelectric Point: 5.2731

>NTDB_id=105596 R8953_RS02200 WP_072221092.1 444712..445227(+) (ctsG) [Campylobacter coli strain IDH-11999]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENADLSN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=105596 R8953_RS02200 WP_072221092.1 444712..445227(+) (ctsG) [Campylobacter coli strain IDH-11999]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGACATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGCCGATCTTAGCAAT
TTTAACGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGTAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment