Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | ACFDA7_RS06050 | Genome accession | NZ_CP170247 |
| Coordinates | 1266071..1267138 (+) | Length | 355 a.a. |
| NCBI ID | WP_002446533.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain Q10 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1261071..1272138
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFDA7_RS06020 (ACFDA7_06015) | - | 1261489..1262949 (+) | 1461 | WP_381412711.1 | rhomboid family intramembrane serine protease | - |
| ACFDA7_RS06025 (ACFDA7_06020) | - | 1262933..1263133 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| ACFDA7_RS06030 (ACFDA7_06025) | - | 1263133..1264119 (+) | 987 | WP_002446536.1 | ROK family glucokinase | - |
| ACFDA7_RS06035 (ACFDA7_06030) | - | 1264119..1264445 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| ACFDA7_RS06040 (ACFDA7_06035) | - | 1264445..1265068 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| ACFDA7_RS06045 (ACFDA7_06040) | comGA | 1265125..1266099 (+) | 975 | WP_002446534.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFDA7_RS06050 (ACFDA7_06045) | comGB | 1266071..1267138 (+) | 1068 | WP_002446533.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFDA7_RS06055 (ACFDA7_06050) | comGC | 1267156..1267473 (+) | 318 | WP_002446532.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFDA7_RS06060 (ACFDA7_06055) | comGD | 1267463..1267900 (+) | 438 | WP_002446531.1 | competence type IV pilus minor pilin ComGD | - |
| ACFDA7_RS06065 (ACFDA7_06060) | - | 1267887..1268180 (+) | 294 | WP_002446530.1 | hypothetical protein | - |
| ACFDA7_RS06070 (ACFDA7_06065) | - | 1268104..1268595 (+) | 492 | WP_070853594.1 | competence type IV pilus minor pilin ComGF | - |
| ACFDA7_RS06075 (ACFDA7_06070) | - | 1268760..1269272 (+) | 513 | WP_002457723.1 | shikimate kinase | - |
| ACFDA7_RS06080 (ACFDA7_06075) | gcvT | 1269490..1270581 (+) | 1092 | WP_002457722.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ACFDA7_RS06085 (ACFDA7_06080) | gcvPA | 1270601..1271947 (+) | 1347 | WP_002446526.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 42350.56 Da Isoelectric Point: 10.0598
>NTDB_id=1055939 ACFDA7_RS06050 WP_002446533.1 1266071..1267138(+) (comGB) [Staphylococcus epidermidis strain Q10]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=1055939 ACFDA7_RS06050 WP_002446533.1 1266071..1267138(+) (comGB) [Staphylococcus epidermidis strain Q10]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
48.596 |
100 |
0.487 |
| comGB | Staphylococcus aureus N315 |
48.596 |
100 |
0.487 |