Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACLV65_RS03260 Genome accession   NZ_OZ217342
Coordinates   627360..628148 (+) Length   262 a.a.
NCBI ID   WP_000940732.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 622360..633148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS03245 (SMIB22_06320) - 622684..623895 (+) 1212 WP_054392598.1 OFA family MFS transporter -
  ACLV65_RS03250 (SMIB22_06330) - 624108..625682 (+) 1575 WP_411864512.1 DEAD/DEAH box helicase -
  ACLV65_RS03255 (SMIB22_06340) - 625719..626975 (-) 1257 WP_411865198.1 ISL3 family transposase -
  ACLV65_RS03260 (SMIB22_06350) codY 627360..628148 (+) 789 WP_000940732.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACLV65_RS03265 (SMIB22_06360) - 628148..628723 (+) 576 WP_173218162.1 cysteine hydrolase family protein -
  ACLV65_RS03275 (SMIB22_06380) - 629171..630301 (+) 1131 WP_000229957.1 ABC transporter ATP-binding protein -
  ACLV65_RS03280 (SMIB22_06390) - 630573..631085 (+) 513 WP_001049318.1 adenine phosphoribosyltransferase -
  ACLV65_RS03285 - 631230..631400 (+) 171 WP_050241508.1 hypothetical protein -
  ACLV65_RS03290 (SMIB22_06400) metA 631466..632410 (+) 945 WP_411864513.1 homoserine O-acetyltransferase MetA -
  ACLV65_RS03295 (SMIB22_06410) - 632419..633096 (+) 678 WP_411864514.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29770.14 Da        Isoelectric Point: 5.4646

>NTDB_id=1055853 ACLV65_RS03260 WP_000940732.1 627360..628148(+) (codY) [Streptococcus mitis isolate S. mitis B22]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=1055853 ACLV65_RS03260 WP_000940732.1 627360..628148(+) (codY) [Streptococcus mitis isolate S. mitis B22]
ATGGCACATTTATTAGAAAAAACAAGAAAGATTACATCAATTTTGAAGCGCTCAGAGGAGCAGTTGCAGGATGAGCTTCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATCTTCCCAGATGACTATGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAATTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCTCCGATTCATGTATCGGGGATTCGTCTTGGTTCTCTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAAGATTTGATTTTGGTTGAGATTGCCAGTACCGTTGTTGGAATTCAACTTCTCAAC
TTCCAGCGTGAGGAAGATGAGAAAAATATCCGTCGCCGTACTGCTGTTACCATGGCGGTTAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGAGAATTAAATGGAAATGAAGGGCAGTTAACTGCGTCTGTGATTGCAGATCGTA
TCGGGATTACCCGTTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGAATTATTGAAAGTCGATCACTTGGA
ATGAAGGGAACCTACCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

48.78

93.893

0.458